General information for g11822.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ubiquitin-conjugating enzyme E2 Q1.
Parent gene
- The parent gene g11822 is located on chr_1: 18586869..18588999 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11822 | g11822.t5 | TSS | g11822.t5 | 18584731 | 18584731 |
| chr_1 | g11822 | g11822.t5 | isoform | g11822.t5 | 18585478 | 18587917 |
| chr_1 | g11822 | g11822.t5 | exon | g11822.t5.exon1 | 18585478 | 18585657 |
| chr_1 | g11822 | g11822.t5 | exon | g11822.t5.exon2 | 18585720 | 18586058 |
| chr_1 | g11822 | g11822.t5 | cds | g11822.t5.CDS1 | 18585804 | 18586058 |
| chr_1 | g11822 | g11822.t5 | exon | g11822.t5.exon3 | 18586118 | 18586409 |
| chr_1 | g11822 | g11822.t5 | cds | g11822.t5.CDS2 | 18586118 | 18586409 |
| chr_1 | g11822 | g11822.t5 | exon | g11822.t5.exon4 | 18586495 | 18586643 |
| chr_1 | g11822 | g11822.t5 | cds | g11822.t5.CDS3 | 18586495 | 18586643 |
| chr_1 | g11822 | g11822.t5 | exon | g11822.t5.exon5 | 18586706 | 18586772 |
| chr_1 | g11822 | g11822.t5 | cds | g11822.t5.CDS4 | 18586706 | 18586772 |
| chr_1 | g11822 | g11822.t5 | exon | g11822.t5.exon6 | 18586838 | 18587917 |
| chr_1 | g11822 | g11822.t5 | cds | g11822.t5.CDS5 | 18586838 | 18586869 |
| chr_1 | g11822 | g11822.t5 | TTS | g11822.t5 | 18587952 | 18587952 |
Sequences
>g11822.t5 Gene=g11822 Length=2107
TCTGTAGAAGTATATATTATATTTAAAATTACCTACTTTTCTTTTTCATTTTTTTAATTA
AAGGAGACATACCCTACCACTCCTCCGGTTTGGTTTGCTGATATTGAAGAACCTAATATA
ACGAATGCAATTCAATTACTTAGCAATACAAGTGGACTAGATAACCACGTTATTAATCAA
GCTAGAATATTATTAGGAGAATTGTGCACTATTCACTCCTGTCCTCTTCCGATTGAGGTT
CATCAACTCAACACGTTCCATTCGATGCCCACTAGTTCAACTCACAATCATAGTTTGAAC
AATGGAAAAACTCCAGCAAAAAATCATCAAGACGAAATTGATACTGATCCAGAAGATCTA
GAAGATGCTGTTGGTGAAAGCGAAGATTCAGATGCTGAAGAAGATTTACCTCTGGAATTA
GACGATGGACGCAGTGCCAGTAAAAAAGATGAAATGGAAGTAGAACATTTAGCGACATTG
GAGAGATTAAGACAAACACAGAGACAAGACTATTTAAGGGGTTCTGTATCGGGAAGCGTT
CAAGCAACTGATCGACTGATGAAAGAGTTGCGAGATATTTATCGCTCAGATTCTTTTAAA
AGGAATATTTATTCGATTGAATTAGTTAATGATTCAATATATGAGTGGAATATTCGGCTT
ATGTCCGTTGATCCAGATAGTCCTCTTCACAATGATCTGCTTATGCTTAAAGAAAAAGAA
GGAAAAGATAGCATTCTTTTGAATATCATATTTAAAGAAACTTATCCTTTTGAACCACCT
TTTGTTCGCGTTGTTCATCCAATTATATCAGGCGGATATGTTTTATTAGGCGGTGCAATT
TGCATGGAACTTTTGACGAAACAGGGGTGGAGCTCAGCTTACACAGTAGAAGCTCTGATA
ATGCAAATTTCAGCAACTTTAGTGAAAGGAAAGGCGCGTATTCAATTTGGGGCAACAAAG
GGTCAATATAGTTTGGCACGTGCACAGCAAAGCTTTAAGTCATTGGTCCAGATACATGAG
AAAAACGGATGGTTTACTCCTCCAAAAGAAGATGGATAAAATTGCAACGAACGAAAATTC
ATTCCCAAATAATTTTTTTTTACAATATAAATAAAAAACAGAAAAGAGAAACACACACAA
AAATTCAAAAAAAGAATACAAGAAAAGTATAAGAATTTTAGTAAAGTATTAAAGTGATTG
CCCCATAAAATTTAAGTTTTACTATCTGTATGCATCAAATGGTTTTACATAATTTGAAAA
CAAGAAAAAATCTATTGCTCTTTCGATTTGAATTTCAACAAAAACTTTTTTCAACTACCT
AGATTTTAATACAATATGGGATTTATTCTGTTAGCTTTTTTCAATTAATTGCAAGAATTG
TCTATTTTAATGGCGATGAATAATAAATGATGAACCTTATGATCTACAATATTTTTAAAT
TAATTTTTTTTCTTGTAATTAAACACAAATATGATATTTAAAAAACTAAATTTTTAATTT
AATTTCATTAATCAATAACTCTGTTTAAATACAATGAGGATAAACTTGTATGCATATAAT
AAATAATGTGAATGAAAGGAATCGTCATTTGGAGCCAAAAAATGGCACAAAGAAAAACAT
TGGCTGTTGAATGGAAAAATAGCGTATTTTTGATAAAATTAGGGAACGAATACAACTAAA
AAATACTGTACATAAAAATCCATTTTCCCTAAAAAAATTATGCATATATCATAGTAATTC
GCCAAACAAAAAATTTAATAAATTATAAAAAAAATTGGTTGGTTTTCATTTTTAAATAAA
TATCTAGGTAGTCTCAACATCTTATCATTAAAAAAATTTACTCATAAGTTATCAATATAA
AGAAAATAAAAAAAGCAGAATCCATTTTTTTGGTAAAATTTGGATCTAGTTTTTGATTTT
TTCTAAGATCTTATTTGCATAGAAATGGTATCATATTACATGATGATTGATGTTTATAAT
GATCAAAATAAATTTTTCTAATTAGCGCATTATTTTGAGAAATAAAACAATCTTGTAAAA
GAAATTTGAGTAAATATTATATTACAAACCTAACTATAATTATTAATTAACTAAATCTGT
ATAAATG
>g11822.t5 Gene=g11822 Length=264
MPTSSTHNHSLNNGKTPAKNHQDEIDTDPEDLEDAVGESEDSDAEEDLPLELDDGRSASK
KDEMEVEHLATLERLRQTQRQDYLRGSVSGSVQATDRLMKELRDIYRSDSFKRNIYSIEL
VNDSIYEWNIRLMSVDPDSPLHNDLLMLKEKEGKDSILLNIIFKETYPFEPPFVRVVHPI
ISGGYVLLGGAICMELLTKQGWSSAYTVEALIMQISATLVKGKARIQFGATKGQYSLARA
QQSFKSLVQIHEKNGWFTPPKEDG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11822.t5 | CDD | cd00195 | UBCc | 95 | 251 | 6.95235E-30 |
| 5 | g11822.t5 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 88 | 256 | 1.2E-58 |
| 8 | g11822.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - |
| 9 | g11822.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - |
| 10 | g11822.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 50 | - |
| 2 | g11822.t5 | PANTHER | PTHR24068:SF56 | UBIQUITIN-CONJUGATING ENZYME E2 Q1 | 36 | 261 | 3.7E-100 |
| 3 | g11822.t5 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 36 | 261 | 3.7E-100 |
| 1 | g11822.t5 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 98 | 222 | 3.7E-9 |
| 11 | g11822.t5 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 96 | 219 | 14.147 |
| 7 | g11822.t5 | SMART | SM00212 | ubc_7 | 96 | 257 | 3.4E-7 |
| 4 | g11822.t5 | SUPERFAMILY | SSF54495 | UBC-like | 91 | 250 | 3.63E-34 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
