General information for g11822.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ubiquitin-conjugating enzyme E2 Q1.
Parent gene
- The parent gene g11822 is located on chr_1: 18586869..18588999 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11822 | g11822.t8 | TSS | g11822.t8 | 18585462 | 18585462 |
| chr_1 | g11822 | g11822.t8 | isoform | g11822.t8 | 18586048 | 18587917 |
| chr_1 | g11822 | g11822.t8 | exon | g11822.t8.exon1 | 18586048 | 18586058 |
| chr_1 | g11822 | g11822.t8 | exon | g11822.t8.exon2 | 18586118 | 18586409 |
| chr_1 | g11822 | g11822.t8 | cds | g11822.t8.CDS1 | 18586157 | 18586409 |
| chr_1 | g11822 | g11822.t8 | exon | g11822.t8.exon3 | 18586495 | 18586643 |
| chr_1 | g11822 | g11822.t8 | cds | g11822.t8.CDS2 | 18586495 | 18586643 |
| chr_1 | g11822 | g11822.t8 | exon | g11822.t8.exon4 | 18586706 | 18586772 |
| chr_1 | g11822 | g11822.t8 | cds | g11822.t8.CDS3 | 18586706 | 18586772 |
| chr_1 | g11822 | g11822.t8 | exon | g11822.t8.exon5 | 18586838 | 18587917 |
| chr_1 | g11822 | g11822.t8 | cds | g11822.t8.CDS4 | 18586838 | 18586869 |
| chr_1 | g11822 | g11822.t8 | TTS | g11822.t8 | 18587952 | 18587952 |
Sequences
>g11822.t8 Gene=g11822 Length=1599
ACTATTTAAGGGGTTCTGTATCGGGAAGCGTTCAAGCAACTGATCGACTGATGAAAGAGT
TGCGAGATATTTATCGCTCAGATTCTTTTAAAAGGAATATTTATTCGATTGAATTAGTTA
ATGATTCAATATATGAGTGGAATATTCGGCTTATGTCCGTTGATCCAGATAGTCCTCTTC
ACAATGATCTGCTTATGCTTAAAGAAAAAGAAGGAAAAGATAGCATTCTTTTGAATATCA
TATTTAAAGAAACTTATCCTTTTGAACCACCTTTTGTTCGCGTTGTTCATCCAATTATAT
CAGGCGGATATGTTTTATTAGGCGGTGCAATTTGCATGGAACTTTTGACGAAACAGGGGT
GGAGCTCAGCTTACACAGTAGAAGCTCTGATAATGCAAATTTCAGCAACTTTAGTGAAAG
GAAAGGCGCGTATTCAATTTGGGGCAACAAAGGGTCAATATAGTTTGGCACGTGCACAGC
AAAGCTTTAAGTCATTGGTCCAGATACATGAGAAAAACGGATGGTTTACTCCTCCAAAAG
AAGATGGATAAAATTGCAACGAACGAAAATTCATTCCCAAATAATTTTTTTTTACAATAT
AAATAAAAAACAGAAAAGAGAAACACACACAAAAATTCAAAAAAAGAATACAAGAAAAGT
ATAAGAATTTTAGTAAAGTATTAAAGTGATTGCCCCATAAAATTTAAGTTTTACTATCTG
TATGCATCAAATGGTTTTACATAATTTGAAAACAAGAAAAAATCTATTGCTCTTTCGATT
TGAATTTCAACAAAAACTTTTTTCAACTACCTAGATTTTAATACAATATGGGATTTATTC
TGTTAGCTTTTTTCAATTAATTGCAAGAATTGTCTATTTTAATGGCGATGAATAATAAAT
GATGAACCTTATGATCTACAATATTTTTAAATTAATTTTTTTTCTTGTAATTAAACACAA
ATATGATATTTAAAAAACTAAATTTTTAATTTAATTTCATTAATCAATAACTCTGTTTAA
ATACAATGAGGATAAACTTGTATGCATATAATAAATAATGTGAATGAAAGGAATCGTCAT
TTGGAGCCAAAAAATGGCACAAAGAAAAACATTGGCTGTTGAATGGAAAAATAGCGTATT
TTTGATAAAATTAGGGAACGAATACAACTAAAAAATACTGTACATAAAAATCCATTTTCC
CTAAAAAAATTATGCATATATCATAGTAATTCGCCAAACAAAAAATTTAATAAATTATAA
AAAAAATTGGTTGGTTTTCATTTTTAAATAAATATCTAGGTAGTCTCAACATCTTATCAT
TAAAAAAATTTACTCATAAGTTATCAATATAAAGAAAATAAAAAAAGCAGAATCCATTTT
TTTGGTAAAATTTGGATCTAGTTTTTGATTTTTTCTAAGATCTTATTTGCATAGAAATGG
TATCATATTACATGATGATTGATGTTTATAATGATCAAAATAAATTTTTCTAATTAGCGC
ATTATTTTGAGAAATAAAACAATCTTGTAAAAGAAATTTGAGTAAATATTATATTACAAA
CCTAACTATAATTATTAATTAACTAAATCTGTATAAATG
>g11822.t8 Gene=g11822 Length=166
MKELRDIYRSDSFKRNIYSIELVNDSIYEWNIRLMSVDPDSPLHNDLLMLKEKEGKDSIL
LNIIFKETYPFEPPFVRVVHPIISGGYVLLGGAICMELLTKQGWSSAYTVEALIMQISAT
LVKGKARIQFGATKGQYSLARAQQSFKSLVQIHEKNGWFTPPKEDG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11822.t8 | CDD | cd00195 | UBCc | 1 | 153 | 0.00000 |
| 6 | g11822.t8 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 158 | 0.00000 |
| 2 | g11822.t8 | PANTHER | PTHR24068:SF56 | UBIQUITIN-CONJUGATING ENZYME E2 Q1 | 1 | 163 | 0.00000 |
| 3 | g11822.t8 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 1 | 163 | 0.00000 |
| 1 | g11822.t8 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 61 | 124 | 0.00000 |
| 7 | g11822.t8 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 1 | 121 | 13.18100 |
| 5 | g11822.t8 | SMART | SM00212 | ubc_7 | 2 | 159 | 0.00019 |
| 4 | g11822.t8 | SUPERFAMILY | SSF54495 | UBC-like | 1 | 152 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
