General information for g11834.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative cAMP-dependent protein kinase type II regulatory subunit.
Parent gene
- The parent gene g11834 is located on chr_1: 18676446..18678716 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11834 | g11834.t4 | TSS | g11834.t4 | 18671608 | 18671608 |
| chr_1 | g11834 | g11834.t4 | isoform | g11834.t4 | 18671924 | 18677037 |
| chr_1 | g11834 | g11834.t4 | exon | g11834.t4.exon1 | 18671924 | 18671999 |
| chr_1 | g11834 | g11834.t4 | exon | g11834.t4.exon2 | 18676361 | 18676659 |
| chr_1 | g11834 | g11834.t4 | cds | g11834.t4.CDS1 | 18676446 | 18676659 |
| chr_1 | g11834 | g11834.t4 | exon | g11834.t4.exon3 | 18676875 | 18677037 |
| chr_1 | g11834 | g11834.t4 | cds | g11834.t4.CDS2 | 18676875 | 18677035 |
| chr_1 | g11834 | g11834.t4 | TTS | g11834.t4 | 18677692 | 18677692 |
Sequences
>g11834.t4 Gene=g11834 Length=538
TCTGAAGTGCTTCACGCCATCGGAACAATCAAAAAAGTGTGATCTAATTGATAAAAATAT
CCATATATTTAATAAACATATCGCACAATAAATAACTAGGTAAAATAACATCAAAAGCAT
ATAGTTTAGTAAAAAGTGAAAATAATTTCGCTAAAAGCATCATGTCAAAACAGAAAGTGA
AAGTTCCCGATAGCCTTCGAGATGTTTTATTAGAATTCTCAATTGCTTACTTGCTTGAAC
AGCCTGGCGATGTAATTGACTTTGCAGTTGATTTCTTTACAAAGCTTCAAACAAATCGAG
CACAAACAGGGATAAGCATCGGATCAAATCAAAAACCAACTACACCAGATGAGAGTATCA
TTTCACAAGATGAAGAACCTGTTGTTAATCGCTTTGCTGCGGGTCGACGAAAGTCTGTTT
TTGCCGAACAGTATGATCCCGAGGAGGATAACGACGATGAAGATAATAACAAGGTCATAT
TCCCAAAGACAGATGAACAACGTGCCCGCCTTTGTGATTCGGTGAAAAATATTTTGCT
>g11834.t4 Gene=g11834 Length=125
MSKQKVKVPDSLRDVLLEFSIAYLLEQPGDVIDFAVDFFTKLQTNRAQTGISIGSNQKPT
TPDESIISQDEEPVVNRFAAGRRKSVFAEQYDPEEDNDDEDNNKVIFPKTDEQRARLCDS
VKNIL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11834.t4 | Gene3D | G3DSA:1.20.890.10 | - | 4 | 47 | 1.5E-14 |
| 6 | g11834.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 109 | - |
| 2 | g11834.t4 | PANTHER | PTHR11635 | CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN | 5 | 125 | 2.6E-29 |
| 3 | g11834.t4 | PANTHER | PTHR11635:SF162 | CAMP-DEPENDENT PROTEIN KINASE TYPE II REGULATORY SUBUNIT | 5 | 125 | 2.6E-29 |
| 1 | g11834.t4 | Pfam | PF02197 | Regulatory subunit of type II PKA R-subunit | 11 | 47 | 1.6E-5 |
| 5 | g11834.t4 | SMART | SM00394 | akam_3 | 10 | 47 | 0.0027 |
| 4 | g11834.t4 | SUPERFAMILY | SSF47391 | Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit | 3 | 46 | 1.41E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
