General information for g1184.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1184 is located on chr_3: 8583920..8590729 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1184 | g1184.t2 | isoform | g1184.t2 | 8551551 | 8552953 |
| chr_3 | g1184 | g1184.t2 | exon | g1184.t2.exon1 | 8551551 | 8552953 |
| chr_3 | g1184 | g1184.t2 | TTS | g1184.t2 | 8551553 | 8551553 |
| chr_3 | g1184 | g1184.t2 | cds | g1184.t2.CDS1 | 8552624 | 8552902 |
| chr_3 | g1184 | g1184.t2 | TSS | g1184.t2 | 8553603 | 8553603 |
Sequences
>g1184.t2 Gene=g1184 Length=1403
GAGCCACTTTCAATTGATCCACCAGAAGATTTACTTGAGAATGCTGAAAGTATGACATCA
CCTATTGTCATTAATGACAAGATGTTATCTCATTCTGCTGTAATGATTGCACCGAATGTT
AATCACAACACTGCACATCATCATCTATCATCAAATGGAATGGAAATTTATCAAACAGTT
CCCAATGGAAATGGACGAAATGTCGGCACATCAGGTGATGCATATAACAACTTTATTGAT
TCTGATGCCATAACATCGATTCTCATGGACTTGAATGAGCAAGATTATGAATGTAATATC
GCGGTCAATGATATCTTGAAATTGATGTAATTTTATTATTAAAAATTTAAAAGTTGAGAA
ATGCTTTTGTAGAATATGGTACAAAAAAAGAAAAATAATATGATAATGTTACAAAAATGT
TGATAAAATTTTTAAAAAAGAGTATGTAAAATCGAAATCACTTGAAATTACTTTTATACA
CATACACAAACACAAACAGAGAAAATTTAAATATTTTATACTTATTGACAAAATAATATT
ACTACAAAATGCATTTTATAAATAACTGCCTATTGAGTATGAAAATTTCAATTTATGCTC
ATAATATTGCATCACTATTATGATTTTCATTAACTCTATGCACATGCAAATATAAATTTC
ACAATTCTTACTCTTATTTCACCTTTGTCTATGTCTAAATAATTTTTAAAAAATGATGAA
ATTATTAAATAATAAAATACATATATTTGTCTTTGAATGGTGTTGGATTAAAATATTGAA
GAAAATTCTTTTTGTCTTTTTATTTGATTACCATTTTTAGTTAATAATGCAAGTAAAAAT
TTCGAAATTTTATTATATTTTATAATTGATTAATCTCACAAAATATGTCCTTTATATCTT
TGACAATTTTGTAGCGCAATAATAAAAAAGTGATATGCGACTACATGCCAATCATATGAA
AGAGAAAAAATGTTTTTTTTCTGTAAAAAAAATCATCCCTCATAAATGTCTAGCAAATCT
AGTGTAACACAACAGAAAAAAAACAACTTTAAGATGAAATATGAATATTTTTTTTGATGA
CGTTATATTGTAGAATAAGTTTATATATTATATATAGCAGCTAGTTTTTATATATTAATG
ATGATGATGATTATTTGTAACATACATAACATGATAGAAATGATGAGTTGATTACTTAGA
CTAGAAGTTTATACTTTTTTTCTTCTTCTTTTTTTTATCTAAACATAACAAAATTACTTT
TTTATTCCTATATCTTGATTATTTCGTACCATAAAACAAAAAATGAACTTTTTTTGGCAA
TTCAATGATTTAAGAAAATAAATGTGTATGTAAGTAAATTTCATAGAGTTTACATAATGA
ATAAAATTTGTTTTAAAAATGAA
>g1184.t2 Gene=g1184 Length=92
MTSPIVINDKMLSHSAVMIAPNVNHNTAHHHLSSNGMEIYQTVPNGNGRNVGTSGDAYNN
FIDSDAITSILMDLNEQDYECNIAVNDILKLM
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
