General information for g1184.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1184 is located on chr_3: 8583920..8590729 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1184 | g1184.t5 | TTS | g1184.t5 | 8559003 | 8559003 |
| chr_3 | g1184 | g1184.t5 | isoform | g1184.t5 | 8559005 | 8560510 |
| chr_3 | g1184 | g1184.t5 | exon | g1184.t5.exon1 | 8559005 | 8559919 |
| chr_3 | g1184 | g1184.t5 | cds | g1184.t5.CDS1 | 8559465 | 8559919 |
| chr_3 | g1184 | g1184.t5 | exon | g1184.t5.exon2 | 8559985 | 8560510 |
| chr_3 | g1184 | g1184.t5 | cds | g1184.t5.CDS2 | 8559985 | 8560438 |
| chr_3 | g1184 | g1184.t5 | TSS | g1184.t5 | NA | NA |
Sequences
>g1184.t5 Gene=g1184 Length=1441
AGTCCTGGTGCAAATAGTAGTATACCGTCTTTATGCAGTCCTGGCTCTCTACCAGAAGAT
GAGCTTGCATTTATGACATTAAATATGGATGATGATTTGGATATGTCTATGCGTGCCCCT
TATATTTCAATGAGCGAATCAGCTGAGCTTCCATTACTAATCGCAGAAGATCTTATGTGG
GGTGCTGCACCTGACATAAAACAATCGCTAACAATTAATAGAAAAATGGAAATTCCAATT
AATGTAGAGCAAGAACAGCAAATAAGCCAACAACAACATACTGAAAGTCCTAACAAACAG
CAGCAACAACAAATTACAACGCAAAATGTACTTGCAAAGAATGCAATGGATTCGAGTTTA
GCATCATTGCTTTGTAGCCAATTATTGCAGCAACAGCTACTAAATCAGCAACAAACAGAA
CAACAAATTATCCTAAGTAAAAATCCAGAAATTAAAATCAAAATTTTGGATAACTTAATT
GATGCGACTAACGAGCTTGATCACAACACCACCAACACTAAAAGCGCTTCAAATGTTGAA
TGCACGATGAACGATCTATTTCAATTAAAGAAACAACAACCAATTACTAAACAAGAAAGC
AAGGAACATACGATTGTTAATCAATTGCAATCTGAATTGGAAAATAGTTCACGAGTGAAA
ACAACAGTAAATCAACATAAACGTCCATCAATATCGTGTGAAATTAGTTCGAAACGGATT
AAAGCACAGGAAACAATCAAAGCAACACCTCAATTGCTTCAGCAACTGATAACGGCGACT
GGAGTGAGTCCAAAAGGGCGCCAGAAAATTCAACTCAATCATAATAACGATGAAAATCAG
CGATGGAAACCACAACAGCAACAACAAACACAACAACAACCGGCATCGAATTCTGTATTA
ATGAATCTGCTAGTGAGTGGATGTGATGTAAGTGCCGGATACTATACATGCCTACCGCGA
CCCAAAGTAGCAAAGGCATAAAAAATAAGAATCTTTTTTGATATACATACACACCTCAAT
TCGATATTTTCCATCATTTTGTTTGTTAATAATAGCCAAGACCGGTTTAAAGTCAAATTG
GTTGATGATGATGATGAGAGCTGCTATATATTTTTTTATTATTATTTTGTTCAATTGTTA
TAATAACATCAGCGAGTAACAACAACACATGTTATTATTATTATTATTTAGTAGTAGTGA
AAATTAAATTATTTATAATTATACTGTTCATCTCTCATTCTCTTTGTGTGTATGTATATT
ACGAATATATGTATACACTAACATATTCCTTCTTTTTCTGCTATTGCATAGAATGGAAAC
ATTCAGCTAGCTAGTTATTGAAAATGAAGAATATGTGTTGAATGAGAATTAGAAGCTACT
TTTTTTGTCTTATTTTAAAAAGATGAAAGTTGAATTAAATTATTATCGTAGACAAGTTAA
A
>g1184.t5 Gene=g1184 Length=302
MTLNMDDDLDMSMRAPYISMSESAELPLLIAEDLMWGAAPDIKQSLTINRKMEIPINVEQ
EQQISQQQHTESPNKQQQQQITTQNVLAKNAMDSSLASLLCSQLLQQQLLNQQQTEQQII
LSKNPEIKIKILDNLIDATNELDHNTTNTKSASNVECTMNDLFQLKKQQPITKQESKEHT
IVNQLQSELENSSRVKTTVNQHKRPSISCEISSKRIKAQETIKATPQLLQQLITATGVSP
KGRQKIQLNHNNDENQRWKPQQQQQTQQQPASNSVLMNLLVSGCDVSAGYYTCLPRPKVA
KA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g1184.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 82 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
