General information for g11866.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Peroxiredoxin-5, mitochondrial.
Parent gene
- The parent gene g11866 is located on chr_1: 18838463..18841219 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11866 | g11866.t4 | isoform | g11866.t4 | 18838086 | 18839050 |
| chr_1 | g11866 | g11866.t4 | exon | g11866.t4.exon1 | 18838086 | 18838407 |
| chr_1 | g11866 | g11866.t4 | TTS | g11866.t4 | 18838100 | 18838100 |
| chr_1 | g11866 | g11866.t4 | cds | g11866.t4.CDS1 | 18838286 | 18838407 |
| chr_1 | g11866 | g11866.t4 | exon | g11866.t4.exon2 | 18838465 | 18838595 |
| chr_1 | g11866 | g11866.t4 | cds | g11866.t4.CDS2 | 18838465 | 18838595 |
| chr_1 | g11866 | g11866.t4 | exon | g11866.t4.exon3 | 18838655 | 18838754 |
| chr_1 | g11866 | g11866.t4 | cds | g11866.t4.CDS3 | 18838655 | 18838754 |
| chr_1 | g11866 | g11866.t4 | exon | g11866.t4.exon4 | 18838825 | 18838933 |
| chr_1 | g11866 | g11866.t4 | cds | g11866.t4.CDS4 | 18838825 | 18838933 |
| chr_1 | g11866 | g11866.t4 | exon | g11866.t4.exon5 | 18839048 | 18839050 |
| chr_1 | g11866 | g11866.t4 | cds | g11866.t4.CDS5 | 18839048 | 18839050 |
| chr_1 | g11866 | g11866.t4 | TSS | g11866.t4 | 18839188 | 18839188 |
Sequences
>g11866.t4 Gene=g11866 Length=665
ATGGAAGGAGATAAAATTCCAAGCGTCGATTTATTCGAAGATTCTCCTGCTAACAAAATA
AATATTGCCGATTTATGTGCTGGCAAAAAAGTTGTTCTGTTTGCAGTACCAGGAGCATTT
ACTCCTGGCTGTAGCAAAACACATTTGCCTAGTTACATTCAAAAAGAATCTGAGCTAAAA
TCTAGCGGTATCAATGAGATTGTTTGCGTTAGTGTAAACGATCCTTTTGTTCATGCTGCA
TGGGGTAACCAATTCAATACTAAAGGCAAAATTCGTATGCTCGCAGATCCAAATGCAAAC
TTTTCAAAAGCTGTCGATTTGACTATTGATTTGCCTCCATTGGGTGGTCTTCGTTCAAAA
CGATACTCAATGGTAATTGAAAATGGAATCGTTAAAGAATTAAATGTCGAACCTGATGGT
ACAGGATTAAGCTGTTCTTTGGCTGATAAATTAAAACTCAAATAAGAACGAACTGGCACA
TTAAACTTTATGCAATAGTGCTGTTTTTCCATTATCAATTTCTAATATAATTCAAATTTA
CAGAAAACTAAATTTCATATAAAATGCTGAAATGATATGAATTGAATTGTATAAATCTCA
AAGTCATAAATGCATTCTTCAATAAAAATAAAGATGCCTTTGAGCTTCAAATTAGAAAAT
TTCAA
>g11866.t4 Gene=g11866 Length=154
MEGDKIPSVDLFEDSPANKINIADLCAGKKVVLFAVPGAFTPGCSKTHLPSYIQKESELK
SSGINEIVCVSVNDPFVHAAWGNQFNTKGKIRMLADPNANFSKAVDLTIDLPPLGGLRSK
RYSMVIENGIVKELNVEPDGTGLSCSLADKLKLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11866.t4 | CDD | cd03013 | PRX5_like | 2 | 151 | 0.000 |
| 5 | g11866.t4 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 154 | 0.000 |
| 2 | g11866.t4 | PANTHER | PTHR10430 | PEROXIREDOXIN | 2 | 151 | 0.000 |
| 3 | g11866.t4 | PANTHER | PTHR10430:SF16 | PEROXIREDOXIN-5, MITOCHONDRIAL | 2 | 151 | 0.000 |
| 1 | g11866.t4 | Pfam | PF08534 | Redoxin | 2 | 141 | 0.000 |
| 6 | g11866.t4 | ProSiteProfiles | PS51352 | Thioredoxin domain profile. | 1 | 154 | 11.582 |
| 4 | g11866.t4 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 2 | 143 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K11187 (peroxiredoxin 5)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
