Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Peroxiredoxin-5, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11866 g11866.t6 isoform g11866.t6 18838086 18839050
chr_1 g11866 g11866.t6 exon g11866.t6.exon1 18838086 18838407
chr_1 g11866 g11866.t6 TTS g11866.t6 18838100 18838100
chr_1 g11866 g11866.t6 cds g11866.t6.CDS1 18838286 18838407
chr_1 g11866 g11866.t6 exon g11866.t6.exon2 18838465 18838595
chr_1 g11866 g11866.t6 cds g11866.t6.CDS2 18838465 18838595
chr_1 g11866 g11866.t6 exon g11866.t6.exon3 18838655 18838754
chr_1 g11866 g11866.t6 cds g11866.t6.CDS3 18838655 18838754
chr_1 g11866 g11866.t6 exon g11866.t6.exon4 18838825 18838926
chr_1 g11866 g11866.t6 cds g11866.t6.CDS4 18838825 18838926
chr_1 g11866 g11866.t6 exon g11866.t6.exon5 18839032 18839050
chr_1 g11866 g11866.t6 cds g11866.t6.CDS5 18839032 18839050
chr_1 g11866 g11866.t6 TSS g11866.t6 18839188 18839188

Sequences

>g11866.t6 Gene=g11866 Length=674
ATGGTACAAATTAAGGCAAATAAAATTCCAAGCGTCGATTTATTCGAAGATTCTCCTGCT
AACAAAATAAATATTGCCGATTTATGTGCTGGCAAAAAAGTTGTTCTGTTTGCAGTACCA
GGAGCATTTACTCCTGGCTGTAGCAAAACACATTTGCCTAGTTACATTCAAAAAGAATCT
GAGCTAAAATCTAGCGGTATCAATGAGATTGTTTGCGTTAGTGTAAACGATCCTTTTGTT
CATGCTGCATGGGGTAACCAATTCAATACTAAAGGCAAAATTCGTATGCTCGCAGATCCA
AATGCAAACTTTTCAAAAGCTGTCGATTTGACTATTGATTTGCCTCCATTGGGTGGTCTT
CGTTCAAAACGATACTCAATGGTAATTGAAAATGGAATCGTTAAAGAATTAAATGTCGAA
CCTGATGGTACAGGATTAAGCTGTTCTTTGGCTGATAAATTAAAACTCAAATAAGAACGA
ACTGGCACATTAAACTTTATGCAATAGTGCTGTTTTTCCATTATCAATTTCTAATATAAT
TCAAATTTACAGAAAACTAAATTTCATATAAAATGCTGAAATGATATGAATTGAATTGTA
TAAATCTCAAAGTCATAAATGCATTCTTCAATAAAAATAAAGATGCCTTTGAGCTTCAAA
TTAGAAAATTTCAA

>g11866.t6 Gene=g11866 Length=157
MVQIKANKIPSVDLFEDSPANKINIADLCAGKKVVLFAVPGAFTPGCSKTHLPSYIQKES
ELKSSGINEIVCVSVNDPFVHAAWGNQFNTKGKIRMLADPNANFSKAVDLTIDLPPLGGL
RSKRYSMVIENGIVKELNVEPDGTGLSCSLADKLKLK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g11866.t6 CDD cd03013 PRX5_like 7 154 0.000
5 g11866.t6 Gene3D G3DSA:3.40.30.10 Glutaredoxin 5 157 0.000
2 g11866.t6 PANTHER PTHR10430 PEROXIREDOXIN 5 154 0.000
3 g11866.t6 PANTHER PTHR10430:SF16 PEROXIREDOXIN-5, MITOCHONDRIAL 5 154 0.000
1 g11866.t6 Pfam PF08534 Redoxin 6 144 0.000
6 g11866.t6 ProSiteProfiles PS51352 Thioredoxin domain profile. 3 157 10.523
4 g11866.t6 SUPERFAMILY SSF52833 Thioredoxin-like 7 146 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed