Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11892 g11892.t3 TSS g11892.t3 19105358 19105358
chr_1 g11892 g11892.t3 isoform g11892.t3 19105383 19106286
chr_1 g11892 g11892.t3 exon g11892.t3.exon1 19105383 19106014
chr_1 g11892 g11892.t3 cds g11892.t3.CDS1 19105388 19106014
chr_1 g11892 g11892.t3 exon g11892.t3.exon2 19106071 19106286
chr_1 g11892 g11892.t3 cds g11892.t3.CDS2 19106071 19106286
chr_1 g11892 g11892.t3 TTS g11892.t3 19106469 19106469

Sequences

>g11892.t3 Gene=g11892 Length=848
TTAAAATGAAGAAAATTTTTATTTTCTGTGTCGTGTGTACATTTTTATATTGCATAAATG
CACAAACTCGTGTGAGAAATCAACAAGGAGTTCAAAGAAAACAACCTCCAGCAAGAGTGT
TAAATAAAGTTCAACCACCTGCAAATACTCGTACAAGAGCTCAACAGCAAGCTATAAGAT
TGCAAGCTCTGAACAAGCAACGTGGTATTATGCCAAAAATCAATAAAGGACACAAAAGAA
TCAAGCCAGCATCAGTTCGTGGATATTGGGATTCTAGTTTATGTATTGAAGATCCTGAAG
GAGTATTTATTCATGATGATTGTGACAAATATTGGTATTGTCAGGATGGTGAAATATATG
AATACTGGTGTCCAGACGATTTACCTATTTTTGACTCTGTGTTATTACAATGTGCACCAG
AAGAATGGGGATGGTGTGCAGCGTGGGGTGACAATAATTGGGATGCAGAATGTCCAGAAG
ATCCAAATGAATTAGGTTTTATTCAAGGTGATACATGTGAAGATTATTACATTTGTATCA
ATGGATGGCCTGTTCAATGGTGGTGTGCTCCTGGACAGCATTTTAATATTAATGAATGGC
ATTGTGACATTCCATCATTAGCTGGATGTGATCCTAATGCTGTTGGACCAATGCCAGGTT
TACCCGATTGCACTCAAGATGGAATTCTTCCTCATCCTTATGATTGCAGTATGTTTATTT
ATTGTCAAAGGAATGGAAATCGATTGATCCAAAAATGTCCTCATTTAGAAGAATTTAATC
CTTCATTAGGGCGTTGTTTAGTTCAATCACCAAGTGCTTGTTTTAATCAAAGCTTTATTC
GCGGTTAA

>g11892.t3 Gene=g11892 Length=280
MKKIFIFCVVCTFLYCINAQTRVRNQQGVQRKQPPARVLNKVQPPANTRTRAQQQAIRLQ
ALNKQRGIMPKINKGHKRIKPASVRGYWDSSLCIEDPEGVFIHDDCDKYWYCQDGEIYEY
WCPDDLPIFDSVLLQCAPEEWGWCAAWGDNNWDAECPEDPNELGFIQGDTCEDYYICING
WPVQWWCAPGQHFNINEWHCDIPSLAGCDPNAVGPMPGLPDCTQDGILPHPYDCSMFIYC
QRNGNRLIQKCPHLEEFNPSLGRCLVQSPSACFNQSFIRG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g11892.t3 Gene3D G3DSA:2.170.140.10 Antimicrobial Protein 149 213 6.9E-9
13 g11892.t3 Gene3D G3DSA:2.170.140.10 Antimicrobial Protein 216 277 1.1E-7
4 g11892.t3 PANTHER PTHR23301:SF72 FI02047P-RELATED 1 209 7.2E-21
6 g11892.t3 PANTHER PTHR23301 CHITIN BINDING PERITROPHIN-A 1 209 7.2E-21
5 g11892.t3 PANTHER PTHR23301:SF72 FI02047P-RELATED 171 273 7.2E-21
7 g11892.t3 PANTHER PTHR23301 CHITIN BINDING PERITROPHIN-A 171 273 7.2E-21
2 g11892.t3 Pfam PF01607 Chitin binding Peritrophin-A domain 93 139 2.4E-7
3 g11892.t3 Pfam PF01607 Chitin binding Peritrophin-A domain 156 208 7.5E-7
1 g11892.t3 Pfam PF01607 Chitin binding Peritrophin-A domain 222 272 1.7E-8
15 g11892.t3 Phobius SIGNAL_PEPTIDE Signal peptide region 1 19 -
16 g11892.t3 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
17 g11892.t3 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 14 -
18 g11892.t3 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 19 -
14 g11892.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 20 280 -
23 g11892.t3 ProSiteProfiles PS50940 Chitin-binding type-2 domain profile. 90 146 9.334
22 g11892.t3 ProSiteProfiles PS50940 Chitin-binding type-2 domain profile. 153 210 11.909
24 g11892.t3 ProSiteProfiles PS50940 Chitin-binding type-2 domain profile. 219 274 10.792
19 g11892.t3 SMART SM00494 chi_10 91 146 1.7
20 g11892.t3 SMART SM00494 chi_10 154 210 2.0E-6
21 g11892.t3 SMART SM00494 chi_10 220 274 6.8E-8
8 g11892.t3 SUPERFAMILY SSF57625 Invertebrate chitin-binding proteins 90 145 1.41E-7
10 g11892.t3 SUPERFAMILY SSF57625 Invertebrate chitin-binding proteins 156 213 1.62E-10
9 g11892.t3 SUPERFAMILY SSF57625 Invertebrate chitin-binding proteins 217 273 6.02E-12
11 g11892.t3 SignalP_EUK SignalP-noTM SignalP-noTM 1 19 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008061 chitin binding MF
GO:0005576 extracellular region CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed