General information for g11895.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11895 is located on chr_1: 19121711..19123562 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11895 | g11895.t1 | isoform | g11895.t1 | 19121711 | 19123562 |
| chr_1 | g11895 | g11895.t1 | exon | g11895.t1.exon1 | 19121711 | 19122167 |
| chr_1 | g11895 | g11895.t1 | cds | g11895.t1.CDS1 | 19121711 | 19122167 |
| chr_1 | g11895 | g11895.t1 | exon | g11895.t1.exon2 | 19122220 | 19123562 |
| chr_1 | g11895 | g11895.t1 | cds | g11895.t1.CDS2 | 19122220 | 19123562 |
| chr_1 | g11895 | g11895.t1 | TSS | g11895.t1 | NA | NA |
| chr_1 | g11895 | g11895.t1 | TTS | g11895.t1 | NA | NA |
Sequences
>g11895.t1 Gene=g11895 Length=1800
ATGAAGTTTTTAATATTCTTCATTGATTTAGCATTAATTTCACTTGCTAAATCAGAAAGT
TTATTGAACTTTGAAGTTATCAAAAATATTATTGAATCATCTGGAAGAAATTCAATTAGT
TTTATAAAATGCAATGAAGATTTAATAAAAGGATTCGTTATTTATCAAAATTTGAATTTG
GGAATGTTCATTCGAGGTTTAAAATCACCTTTAAAAATTCAAGAAAATAAAATCACATCA
GCAGTTATTACCATTTCATCTTTAAACGATTTCAATGAAATTTCTTCACTTTTTAGCACA
GAAAATATAATTCTTGATGGGCACTTCATTATAATCTTTGAAAAAGCAATCATAACTGAT
ATTGAAAAAATATTCACAAAATTATGGAAGATTTATGTTTACAATGTCAATGTCATTACA
ACATCATCGTCAAACAGTGAAAACACAATTTTATTATATACCTTTAAGCCATTTATCAAC
GACTTCTCTTGTGAAAACATGAAGCCTATAAAAATCATTGAATATGATATGAAGTCAATG
CAATGGCATTCAAAAGTCTTTTATCCTGATAAATTTAAAAATCTCCATTTCTGTCCTTTA
AAAGTAGGCAGTTTTGAAAAACAACCTGGATTTTTTACAACAAAAATTAAAAATGAAAAA
ATTATCACAGGCATTGAAGCTGATTTGATAAATATTTTTGGTAAATTTTTAAATTATAAA
CCAATTTTCAATATTTATCCATCAAATATGGGAACAATTCATAAAAATAAAACATCAACT
GGTTTATTAAAGAGAGTTTTTGAAAATGAAATTGATGTTATCATAGGAACTCTTTCACTT
CAGCAATCACGAGCAGAATATTTGAGTGAAACACACATGATTTATAACGATAAATTAGTT
TTAGTTATTCCGCCTCCATTTTTAATGAATTCACTTGGTAAAATTTTGCTCCCATTTCAT
ATCTATACTTGGATTTCTGTAGGTTTATTTATTTTTTTGGTTTGTGTTATTATTGTTACA
TTGAAGTTTACACCTCAAATATTTCACGATTACATCATTGGTGCAAATGTTAAATGCAAC
ATTTTAGAAGTTTGGAATTTGTTACTTGGTGGAGCTCAAAAGAAAATTTCAAAATCAAAC
TTTCCTAGATTTTTATTGGCAAAATTTTTGATTTTTGCACTGGTCATCAGAAGTATCTAT
CAAGGAGCAATTTTTGACATTTTAAAAAATGATGTCAGCACAGTAGAATTAAAAACGATT
GATGAATTTATTGAAAATAAATTTACATTTTATATTTACGATTCTCTTGCTGGAAGATTA
AATGGAACAAAATATTTACAAAGGTATAAAAGAATAAGCCCTTCTGAAATCACAGCATTT
GAAGAATTAACACTTGATCCTTCATTTAAAGGAGTGGTTTTTGATTATTTTACAATCGTT
CTCTATAATAATTTCCTTAATCGTAAAAAGTATTCTTTAAAAATTTGCAAAGAGTCGCTT
CTTACTAATCAAATTGTTTTCTATTTTACTAAAAATTTTTATCTTGTCGATGAATTTAAT
GATTTGATTGGAAGATTCAAATCGGCTGGTTTAATTGACCATATAATGTCCAATTATATT
GATATGAAATTATTGAACTCGATTGATATAAAAAAACCAGCAACAGCCTTGACTTTGGAG
AATTTGGAAGGAATTTTTAAATTATTAATTTGTGCACTGTTGATAGCAATTTTAAATTTT
CTATTAGAAATTTTTTATGGAAACATTAAAAAGAAGAAAAAAGTCAATTTGAAAAATTAG
>g11895.t1 Gene=g11895 Length=599
MKFLIFFIDLALISLAKSESLLNFEVIKNIIESSGRNSISFIKCNEDLIKGFVIYQNLNL
GMFIRGLKSPLKIQENKITSAVITISSLNDFNEISSLFSTENIILDGHFIIIFEKAIITD
IEKIFTKLWKIYVYNVNVITTSSSNSENTILLYTFKPFINDFSCENMKPIKIIEYDMKSM
QWHSKVFYPDKFKNLHFCPLKVGSFEKQPGFFTTKIKNEKIITGIEADLINIFGKFLNYK
PIFNIYPSNMGTIHKNKTSTGLLKRVFENEIDVIIGTLSLQQSRAEYLSETHMIYNDKLV
LVIPPPFLMNSLGKILLPFHIYTWISVGLFIFLVCVIIVTLKFTPQIFHDYIIGANVKCN
ILEVWNLLLGGAQKKISKSNFPRFLLAKFLIFALVIRSIYQGAIFDILKNDVSTVELKTI
DEFIENKFTFYIYDSLAGRLNGTKYLQRYKRISPSEITAFEELTLDPSFKGVVFDYFTIV
LYNNFLNRKKYSLKICKESLLTNQIVFYFTKNFYLVDEFNDLIGRFKSAGLIDHIMSNYI
DMKLLNSIDIKKPATALTLENLEGIFKLLICALLIAILNFLLEIFYGNIKKKKKVNLKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g11895.t1 | Gene3D | G3DSA:3.40.190.10 | - | 222 | 555 | 7.5E-31 |
| 10 | g11895.t1 | Gene3D | G3DSA:3.40.190.10 | - | 298 | 505 | 7.5E-31 |
| 8 | g11895.t1 | Gene3D | G3DSA:1.10.287.70 | - | 308 | 583 | 7.5E-31 |
| 1 | g11895.t1 | PANTHER | PTHR42643:SF16 | IONOTROPIC RECEPTOR 11A-RELATED | 119 | 595 | 2.3E-60 |
| 2 | g11895.t1 | PANTHER | PTHR42643 | IONOTROPIC RECEPTOR 20A-RELATED | 119 | 595 | 2.3E-60 |
| 15 | g11895.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 16 | g11895.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 17 | g11895.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 13 | - |
| 21 | g11895.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 18 | - |
| 13 | g11895.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 320 | - |
| 19 | g11895.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 321 | 341 | - |
| 12 | g11895.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 342 | 383 | - |
| 18 | g11895.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 384 | 400 | - |
| 14 | g11895.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 401 | 564 | - |
| 20 | g11895.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 565 | 586 | - |
| 11 | g11895.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 587 | 599 | - |
| 6 | g11895.t1 | SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 199 | 540 | 2.39E-19 |
| 7 | g11895.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
| 3 | g11895.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 319 | 341 | - |
| 5 | g11895.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 384 | 401 | - |
| 4 | g11895.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 565 | 587 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed