Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 4g1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11913 g11913.t4 TSS g11913.t4 19257170 19257170
chr_1 g11913 g11913.t4 isoform g11913.t4 19257262 19259924
chr_1 g11913 g11913.t4 exon g11913.t4.exon1 19257262 19257463
chr_1 g11913 g11913.t4 cds g11913.t4.CDS1 19257262 19257463
chr_1 g11913 g11913.t4 exon g11913.t4.exon2 19257526 19257690
chr_1 g11913 g11913.t4 cds g11913.t4.CDS2 19257526 19257690
chr_1 g11913 g11913.t4 exon g11913.t4.exon3 19257748 19258033
chr_1 g11913 g11913.t4 cds g11913.t4.CDS3 19257748 19258033
chr_1 g11913 g11913.t4 exon g11913.t4.exon4 19258092 19258524
chr_1 g11913 g11913.t4 cds g11913.t4.CDS4 19258092 19258524
chr_1 g11913 g11913.t4 exon g11913.t4.exon5 19259031 19259924
chr_1 g11913 g11913.t4 cds g11913.t4.CDS5 19259031 19259612
chr_1 g11913 g11913.t4 TTS g11913.t4 19259913 19259913

Sequences

>g11913.t4 Gene=g11913 Length=1980
ATGGCTGTGGAACAAATTGTTCAAAGCAGCATTTTAACATCGCCGCTCGTCCTTCCACTT
TTGGCAATTGCTTTTGTTCTCACAGCAATTCATTTTTGGCAAATGTCAAGAAGACAAAGG
AAAATTGGAGATTTAATTCCTGGTCCGCCAACTATCCCAATTGTAGGAAATGCTCATTTT
TTCTTAAATCTCACAAATCATGAAATGTTTGGCAAAGCGCTTGACATTGTGAATAGTTAT
GGTCATGTCGTTCGTGGTTGGGTTGGTCATAAACTTATAGTTGGACTCTCAGATCCACGT
GATGTTGAATTAATCCTCGGAAGTCATGTTCATATTGATAAATCTGATGAATATAGATTC
TTTAAAGATTGGTTAGGCAATGGATTATTAATTTCAACTGGTGAAAAATGGAGAACTCAT
AGAAAACTTATTGCGCCAGCTTTTCATATGAATGTTCTTAAAAGTTTTATGCCAACATTT
AATGATAACAGTCGATTTGTAATAAAAAAACTCATGAAAGAAGTTGGAAAAGAATTTGAT
TGTCATGATTATATGAGTGAAGCAACTGTTGATATTTTGCTTGAAACAGCAATGGGTTCA
AAAAGAACAAGCGAAAGCGAAGAAGGTTTCAAATATGCAATGGCTGTAATGAAAATGTGC
GACATTCTTCATAAACGTCAATTCAAAATTTTCTCACGCTTTGAGCCTTTCTTCACACTC
ACTGGAATGCGTGAGCAACAAAAGAAATTGCTCGGAATTATTCATGGAATGACACAACGT
GTTTTAAATGAGAAAAAAGATATTTTTGACAAAAATTTAGCAGAAGGAAATTTGCCTTCA
CCTTCTTTGGCTGAAATTATCAAAAATGATGAACAAGTCGATCAAGCAGTTAAAAAAGCA
AAAGCAAAAGCTACTGGACTTCGTGATGATCTCGATGATATTGATGAAAATGATGTAGGA
GAAAAACGAAGATTGGCATTTTTAGATCTTATGATTGAGACATCACATTATAATCCAACA
CAATTATCAAAGGATGAGATTAAGCAGCAAGTGGATACAATCATGTTTGAGGGCCATGAC
ACTTCGGCTGCAGGTTCAAGCTTCACACTCTGCATGCTTGGTTGTCATCCTGATATTCAA
GAAAAAGTTTATGCAGAACAGAAAGCAATCTTTGGTGATTCTGATCGTGATTGTACCTTT
GCTGATACTTTAGAAATGAAATATTTAGAAAGAGTGATTTTTGAAACACTAAGATTGTAT
CCTCCAGTACCATTGATTGCTAGAAAAATCAACCAAGACTTGAAACTTGCTTCAGTTGAC
TATGTAATTCCTTCGGGTACAACAATTATTATTGGCACTTACAAAATTCACCGTAGACCT
GATATTTATAATAACCCTGAGAAATTTGATCCTGATAACTTTTTACCAGAAAGAACTGCA
AATCGTCATTATTACAGTTATATTCCTTTCTCAGCTGGACCTCGAAGTTGTGTCGGACGC
AAATATGCGATGCTTAAATTAAAAGTGTTGCTCAGTACAATTATTAGAAACTTCCATGTT
TATAGCACTGTACAAGAGAAAGATTTCAAATTACAAGGCGACATTATCCTCAAGAGGACT
GACGGTTTCCGAATTAAACTTGAGCAACGAAAGACAAAGGCCACATAAATGACTTTTATT
ATAATCATTAACACTCGCTAAACGGACTAAACGGAAACAATCAACTTGATCTATTATTTT
TCCTTCCTCTTTTCTATCTTTTACTTCTTTCTCTATCATGCAATCAAAAAAATGTAAAAA
AAAATTAACTCTCAAAGCAAGAAGCTCATTAAGCTATTTTTCTGTGATTCTATTTTTTTC
TCTCTTTTTCTTTCCTACATTTTTATTTCTTCTTTTACCTTTGTGTTACATTTTGGGATT
TCTTTCTAATAAATGCATTTATTGAAAAAGAATTCGACAAGAATTTCAGAAAAACTCTCA

>g11913.t4 Gene=g11913 Length=555
MAVEQIVQSSILTSPLVLPLLAIAFVLTAIHFWQMSRRQRKIGDLIPGPPTIPIVGNAHF
FLNLTNHEMFGKALDIVNSYGHVVRGWVGHKLIVGLSDPRDVELILGSHVHIDKSDEYRF
FKDWLGNGLLISTGEKWRTHRKLIAPAFHMNVLKSFMPTFNDNSRFVIKKLMKEVGKEFD
CHDYMSEATVDILLETAMGSKRTSESEEGFKYAMAVMKMCDILHKRQFKIFSRFEPFFTL
TGMREQQKKLLGIIHGMTQRVLNEKKDIFDKNLAEGNLPSPSLAEIIKNDEQVDQAVKKA
KAKATGLRDDLDDIDENDVGEKRRLAFLDLMIETSHYNPTQLSKDEIKQQVDTIMFEGHD
TSAAGSSFTLCMLGCHPDIQEKVYAEQKAIFGDSDRDCTFADTLEMKYLERVIFETLRLY
PPVPLIARKINQDLKLASVDYVIPSGTTIIIGTYKIHRRPDIYNNPEKFDPDNFLPERTA
NRHYYSYIPFSAGPRSCVGRKYAMLKLKVLLSTIIRNFHVYSTVQEKDFKLQGDIILKRT
DGFRIKLEQRKTKAT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g11913.t4 Coils Coil Coil 297 317 -
2 g11913.t4 PANTHER PTHR24291:SF106 CYTOCHROME P450 4G1-RELATED 9 549 4.5E-260
3 g11913.t4 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 9 549 4.5E-260
5 g11913.t4 PRINTS PR00463 E-class P450 group I signature 77 96 6.9E-23
7 g11913.t4 PRINTS PR00463 E-class P450 group I signature 346 363 6.9E-23
14 g11913.t4 PRINTS PR00385 P450 superfamily signature 357 374 8.0E-9
10 g11913.t4 PRINTS PR00463 E-class P450 group I signature 366 392 6.9E-23
8 g11913.t4 PRINTS PR00463 E-class P450 group I signature 410 428 6.9E-23
12 g11913.t4 PRINTS PR00385 P450 superfamily signature 411 422 8.0E-9
9 g11913.t4 PRINTS PR00463 E-class P450 group I signature 452 476 6.9E-23
6 g11913.t4 PRINTS PR00463 E-class P450 group I signature 487 497 6.9E-23
13 g11913.t4 PRINTS PR00385 P450 superfamily signature 488 497 8.0E-9
4 g11913.t4 PRINTS PR00463 E-class P450 group I signature 497 520 6.9E-23
11 g11913.t4 PRINTS PR00385 P450 superfamily signature 497 508 8.0E-9
1 g11913.t4 Pfam PF00067 Cytochrome P450 47 545 3.4E-103
18 g11913.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
19 g11913.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 33 -
17 g11913.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 34 555 -
21 g11913.t4 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 490 499 -
15 g11913.t4 SUPERFAMILY SSF48264 Cytochrome P450 46 550 5.37E-111
20 g11913.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed