Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 4g1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11913 g11913.t5 TSS g11913.t5 19257170 19257170
chr_1 g11913 g11913.t5 isoform g11913.t5 19257262 19259924
chr_1 g11913 g11913.t5 exon g11913.t5.exon1 19257262 19257463
chr_1 g11913 g11913.t5 cds g11913.t5.CDS1 19257262 19257463
chr_1 g11913 g11913.t5 exon g11913.t5.exon2 19257526 19257690
chr_1 g11913 g11913.t5 cds g11913.t5.CDS2 19257526 19257690
chr_1 g11913 g11913.t5 exon g11913.t5.exon3 19257748 19258033
chr_1 g11913 g11913.t5 cds g11913.t5.CDS3 19257748 19258033
chr_1 g11913 g11913.t5 exon g11913.t5.exon4 19258092 19258528
chr_1 g11913 g11913.t5 cds g11913.t5.CDS4 19258092 19258528
chr_1 g11913 g11913.t5 exon g11913.t5.exon5 19259038 19259924
chr_1 g11913 g11913.t5 cds g11913.t5.CDS5 19259038 19259612
chr_1 g11913 g11913.t5 TTS g11913.t5 19259913 19259913

Sequences

>g11913.t5 Gene=g11913 Length=1977
ATGGCTGTGGAACAAATTGTTCAAAGCAGCATTTTAACATCGCCGCTCGTCCTTCCACTT
TTGGCAATTGCTTTTGTTCTCACAGCAATTCATTTTTGGCAAATGTCAAGAAGACAAAGG
AAAATTGGAGATTTAATTCCTGGTCCGCCAACTATCCCAATTGTAGGAAATGCTCATTTT
TTCTTAAATCTCACAAATCATGAAATGTTTGGCAAAGCGCTTGACATTGTGAATAGTTAT
GGTCATGTCGTTCGTGGTTGGGTTGGTCATAAACTTATAGTTGGACTCTCAGATCCACGT
GATGTTGAATTAATCCTCGGAAGTCATGTTCATATTGATAAATCTGATGAATATAGATTC
TTTAAAGATTGGTTAGGCAATGGATTATTAATTTCAACTGGTGAAAAATGGAGAACTCAT
AGAAAACTTATTGCGCCAGCTTTTCATATGAATGTTCTTAAAAGTTTTATGCCAACATTT
AATGATAACAGTCGATTTGTAATAAAAAAACTCATGAAAGAAGTTGGAAAAGAATTTGAT
TGTCATGATTATATGAGTGAAGCAACTGTTGATATTTTGCTTGAAACAGCAATGGGTTCA
AAAAGAACAAGCGAAAGCGAAGAAGGTTTCAAATATGCAATGGCTGTAATGAAAATGTGC
GACATTCTTCATAAACGTCAATTCAAAATTTTCTCACGCTTTGAGCCTTTCTTCACACTC
ACTGGAATGCGTGAGCAACAAAAGAAATTGCTCGGAATTATTCATGGAATGACACAACGT
GTTTTAAATGAGAAAAAAGATATTTTTGACAAAAATTTAGCAGAAGGAAATTTGCCTTCA
CCTTCTTTGGCTGAAATTATCAAAAATGATGAACAAGTCGATCAAGCAGTTAAAAAAGCA
AAAGCAAAAGCTACTGGACTTCGTGATGATCTCGATGATATTGATGAAAATGATGTAGGA
GAAAAACGAAGATTGGCATTTTTAGATCTTATGATTGAGACATCACATTATAATCCAACA
CAATTATCAAAGGATGAGATTAAGCAGCAAGTGGATACAATCATGTTTGAGGGCCATGAC
ACTTCGGAAAGTTCAAGCTTCACACTCTGCATGCTTGGTTGTCATCCTGATATTCAAGAA
AAAGTTTATGCAGAACAGAAAGCAATCTTTGGTGATTCTGATCGTGATTGTACCTTTGCT
GATACTTTAGAAATGAAATATTTAGAAAGAGTGATTTTTGAAACACTAAGATTGTATCCT
CCAGTACCATTGATTGCTAGAAAAATCAACCAAGACTTGAAACTTGCTTCAGTTGACTAT
GTAATTCCTTCGGGTACAACAATTATTATTGGCACTTACAAAATTCACCGTAGACCTGAT
ATTTATAATAACCCTGAGAAATTTGATCCTGATAACTTTTTACCAGAAAGAACTGCAAAT
CGTCATTATTACAGTTATATTCCTTTCTCAGCTGGACCTCGAAGTTGTGTCGGACGCAAA
TATGCGATGCTTAAATTAAAAGTGTTGCTCAGTACAATTATTAGAAACTTCCATGTTTAT
AGCACTGTACAAGAGAAAGATTTCAAATTACAAGGCGACATTATCCTCAAGAGGACTGAC
GGTTTCCGAATTAAACTTGAGCAACGAAAGACAAAGGCCACATAAATGACTTTTATTATA
ATCATTAACACTCGCTAAACGGACTAAACGGAAACAATCAACTTGATCTATTATTTTTCC
TTCCTCTTTTCTATCTTTTACTTCTTTCTCTATCATGCAATCAAAAAAATGTAAAAAAAA
ATTAACTCTCAAAGCAAGAAGCTCATTAAGCTATTTTTCTGTGATTCTATTTTTTTCTCT
CTTTTTCTTTCCTACATTTTTATTTCTTCTTTTACCTTTGTGTTACATTTTGGGATTTCT
TTCTAATAAATGCATTTATTGAAAAAGAATTCGACAAGAATTTCAGAAAAACTCTCA

>g11913.t5 Gene=g11913 Length=554
MAVEQIVQSSILTSPLVLPLLAIAFVLTAIHFWQMSRRQRKIGDLIPGPPTIPIVGNAHF
FLNLTNHEMFGKALDIVNSYGHVVRGWVGHKLIVGLSDPRDVELILGSHVHIDKSDEYRF
FKDWLGNGLLISTGEKWRTHRKLIAPAFHMNVLKSFMPTFNDNSRFVIKKLMKEVGKEFD
CHDYMSEATVDILLETAMGSKRTSESEEGFKYAMAVMKMCDILHKRQFKIFSRFEPFFTL
TGMREQQKKLLGIIHGMTQRVLNEKKDIFDKNLAEGNLPSPSLAEIIKNDEQVDQAVKKA
KAKATGLRDDLDDIDENDVGEKRRLAFLDLMIETSHYNPTQLSKDEIKQQVDTIMFEGHD
TSESSSFTLCMLGCHPDIQEKVYAEQKAIFGDSDRDCTFADTLEMKYLERVIFETLRLYP
PVPLIARKINQDLKLASVDYVIPSGTTIIIGTYKIHRRPDIYNNPEKFDPDNFLPERTAN
RHYYSYIPFSAGPRSCVGRKYAMLKLKVLLSTIIRNFHVYSTVQEKDFKLQGDIILKRTD
GFRIKLEQRKTKAT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g11913.t5 Coils Coil Coil 297 317 -
16 g11913.t5 Gene3D G3DSA:1.10.630.10 Cytochrome p450 30 554 2.3E-108
2 g11913.t5 PANTHER PTHR24291:SF106 CYTOCHROME P450 4G1-RELATED 9 548 1.6E-256
3 g11913.t5 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 9 548 1.6E-256
6 g11913.t5 PRINTS PR00463 E-class P450 group I signature 77 96 1.9E-22
9 g11913.t5 PRINTS PR00463 E-class P450 group I signature 346 363 1.9E-22
5 g11913.t5 PRINTS PR00463 E-class P450 group I signature 365 391 1.9E-22
13 g11913.t5 PRINTS PR00385 P450 superfamily signature 374 387 2.8E-9
10 g11913.t5 PRINTS PR00463 E-class P450 group I signature 409 427 1.9E-22
12 g11913.t5 PRINTS PR00385 P450 superfamily signature 410 421 2.8E-9
7 g11913.t5 PRINTS PR00463 E-class P450 group I signature 451 475 1.9E-22
4 g11913.t5 PRINTS PR00463 E-class P450 group I signature 486 496 1.9E-22
11 g11913.t5 PRINTS PR00385 P450 superfamily signature 487 496 2.8E-9
8 g11913.t5 PRINTS PR00463 E-class P450 group I signature 496 519 1.9E-22
14 g11913.t5 PRINTS PR00385 P450 superfamily signature 496 507 2.8E-9
1 g11913.t5 Pfam PF00067 Cytochrome P450 47 544 2.1E-100
19 g11913.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
20 g11913.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 33 -
18 g11913.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 34 554 -
22 g11913.t5 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 489 498 -
15 g11913.t5 SUPERFAMILY SSF48264 Cytochrome P450 46 549 5.5E-108
21 g11913.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed