Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 315a1, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11926 g11926.t1 TSS g11926.t1 19304552 19304552
chr_1 g11926 g11926.t1 isoform g11926.t1 19305207 19308492
chr_1 g11926 g11926.t1 exon g11926.t1.exon1 19305207 19305367
chr_1 g11926 g11926.t1 cds g11926.t1.CDS1 19305207 19305367
chr_1 g11926 g11926.t1 exon g11926.t1.exon2 19306883 19307089
chr_1 g11926 g11926.t1 cds g11926.t1.CDS2 19306883 19307089
chr_1 g11926 g11926.t1 exon g11926.t1.exon3 19307150 19307340
chr_1 g11926 g11926.t1 cds g11926.t1.CDS3 19307150 19307340
chr_1 g11926 g11926.t1 exon g11926.t1.exon4 19307398 19307604
chr_1 g11926 g11926.t1 cds g11926.t1.CDS4 19307398 19307604
chr_1 g11926 g11926.t1 exon g11926.t1.exon5 19307662 19307801
chr_1 g11926 g11926.t1 cds g11926.t1.CDS5 19307662 19307801
chr_1 g11926 g11926.t1 exon g11926.t1.exon6 19307872 19308294
chr_1 g11926 g11926.t1 cds g11926.t1.CDS6 19307872 19308294
chr_1 g11926 g11926.t1 exon g11926.t1.exon7 19308376 19308492
chr_1 g11926 g11926.t1 cds g11926.t1.CDS7 19308376 19308492
chr_1 g11926 g11926.t1 TTS g11926.t1 19309108 19309108

Sequences

>g11926.t1 Gene=g11926 Length=1446
ATGAGTTGGAAAGTGTTGATACAGTTGCGAAAGTTTGCAACAACACAATCAGCAACAAAA
AGTGGCAAAAAATTGCTAGAATTTAATCAAATACCAGGACCAAAATACTATCCATTTCTC
GGTCCACTAAATGATGTGATGACTCTTGGTAAAAATGAAAAGTTGCATTTGACGGTGGAC
GAGATGCACAAAAAATATGGAGGAATTTTTCGCATGAAAATTGACTCAATTGACACTGTC
TTTCTCTCATCTGCTGACTACATTCGTTCTATATTCGCATACGAGGGAAAATATCCGAAA
CATCCGATTCCGCCAGCTTGGATGTACTTCAATCAAAAATATAACATTCAACGTGGATTA
ATTTTCATGAATGATGAAGAATGGCTAAATATTCGCCAGGTCATGAATAACTTTTTATTG
AAAGACGCAGAATGGTCACATAAGCTTATAGAGATGACATGCGATAATTTTACTAGCAAA
TTGAAACGAATTTTAGATTCTGAAGATGCAACTGTTATAGAAAATCTTGAAGATGAACTT
TATTTATGGTCAATCTATTCAATCCTAAATCTTATGCTTGGTTCATCAACATCTGAACAA
ACTGATCGAGAATTTGATGCAAAAGTTTGGGAATTTGTGAATGTGGTGAAAAAAATATTT
GAAACTAGCTCGAAACTCATGTCAATTCCTCCTCGTTTGGCAGATAAAATCAACATGAAA
GTTTATAAAGAATTTGAAAGCTATGCACATAAATCAATAACACTTTCAAGGAGTTTAATT
TCAATTTTAAGTAATGACATGCAAAGCTCTGAGAATGGTTTACTAAGAAAAATGAAGTCT
CAGAATTTATCAGATGAAGTAATAGTACGAATTTTCAGTGACTTGATAATTGCAGCAGGT
GATACAACAGTTTACACAACGCTATGGCTGCTTCACTCAATTGCAAAAGATGCAGCATTA
TCAACGAAACTAAGAAAGGACATTGGTGATAATCCAAAGAGCATGGAAGCACCGTTAGTA
CGTGCAGCTTTAAGAGAAACTCTTCGTCTCTATCCTGTAGCGCCATTCATTGGTAGATTT
ATCGATACAGATGCAGAAATTGGCAATTATTCAATACCCAAAGGTGTTCTAGCCCTTGCA
TCTCTTTACACATCAAGTCGTGATCCAGCAAATTTTACGGATCCATTAAAATTCATTCCT
GAACGATGGCTTCGTGATGAAAACAGACAAGTTATGAATCCTCATGCTTCAATGCCATTT
GCAATCGGTGCACGGTCATGTGTTGGCAAGAAAATAGCATCCTATCAAATTCACAGTTTA
ATTACCAAGATCCTGCAGCAATTCACATTAGAGTCAAAAAATAAGGAGGACGTTAAATTG
AAATTACATCTTATTGGGGTTCCAGACAAAAAAATTCAAATTGCCTTCCGTAAAACGTTG
CCTTAG

>g11926.t1 Gene=g11926 Length=481
MSWKVLIQLRKFATTQSATKSGKKLLEFNQIPGPKYYPFLGPLNDVMTLGKNEKLHLTVD
EMHKKYGGIFRMKIDSIDTVFLSSADYIRSIFAYEGKYPKHPIPPAWMYFNQKYNIQRGL
IFMNDEEWLNIRQVMNNFLLKDAEWSHKLIEMTCDNFTSKLKRILDSEDATVIENLEDEL
YLWSIYSILNLMLGSSTSEQTDREFDAKVWEFVNVVKKIFETSSKLMSIPPRLADKINMK
VYKEFESYAHKSITLSRSLISILSNDMQSSENGLLRKMKSQNLSDEVIVRIFSDLIIAAG
DTTVYTTLWLLHSIAKDAALSTKLRKDIGDNPKSMEAPLVRAALRETLRLYPVAPFIGRF
IDTDAEIGNYSIPKGVLALASLYTSSRDPANFTDPLKFIPERWLRDENRQVMNPHASMPF
AIGARSCVGKKIASYQIHSLITKILQQFTLESKNKEDVKLKLHLIGVPDKKIQIAFRKTL
P

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g11926.t1 Gene3D G3DSA:1.10.630.10 Cytochrome p450 20 480 0
2 g11926.t1 PANTHER PTHR24291:SF161 CYTOCHROME P450 315A1, MITOCHONDRIAL 19 477 0
3 g11926.t1 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 19 477 0
5 g11926.t1 PRINTS PR00463 E-class P450 group I signature 63 82 0
7 g11926.t1 PRINTS PR00463 E-class P450 group I signature 287 304 0
12 g11926.t1 PRINTS PR00385 P450 superfamily signature 298 315 0
4 g11926.t1 PRINTS PR00463 E-class P450 group I signature 341 359 0
11 g11926.t1 PRINTS PR00385 P450 superfamily signature 342 353 0
9 g11926.t1 PRINTS PR00463 E-class P450 group I signature 381 405 0
6 g11926.t1 PRINTS PR00463 E-class P450 group I signature 417 427 0
10 g11926.t1 PRINTS PR00385 P450 superfamily signature 418 427 0
8 g11926.t1 PRINTS PR00463 E-class P450 group I signature 427 450 0
13 g11926.t1 PRINTS PR00385 P450 superfamily signature 427 438 0
1 g11926.t1 Pfam PF00067 Cytochrome P450 32 475 0
14 g11926.t1 SUPERFAMILY SSF48264 Cytochrome P450 28 477 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values