General information for g11929.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as D-3-phosphoglycerate dehydrogenase.
Parent gene
- The parent gene g11929 is located on chr_1: 19346541..19353281 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11929 | g11929.t1 | TTS | g11929.t1 | 19345841 | 19345841 |
| chr_1 | g11929 | g11929.t1 | isoform | g11929.t1 | 19346125 | 19353281 |
| chr_1 | g11929 | g11929.t1 | exon | g11929.t1.exon1 | 19346125 | 19346480 |
| chr_1 | g11929 | g11929.t1 | cds | g11929.t1.CDS1 | 19346125 | 19346480 |
| chr_1 | g11929 | g11929.t1 | exon | g11929.t1.exon2 | 19346541 | 19346893 |
| chr_1 | g11929 | g11929.t1 | cds | g11929.t1.CDS2 | 19346541 | 19346893 |
| chr_1 | g11929 | g11929.t1 | exon | g11929.t1.exon3 | 19346974 | 19347131 |
| chr_1 | g11929 | g11929.t1 | cds | g11929.t1.CDS3 | 19346974 | 19347131 |
| chr_1 | g11929 | g11929.t1 | exon | g11929.t1.exon4 | 19347235 | 19347422 |
| chr_1 | g11929 | g11929.t1 | cds | g11929.t1.CDS4 | 19347235 | 19347422 |
| chr_1 | g11929 | g11929.t1 | exon | g11929.t1.exon5 | 19347698 | 19347772 |
| chr_1 | g11929 | g11929.t1 | cds | g11929.t1.CDS5 | 19347698 | 19347772 |
| chr_1 | g11929 | g11929.t1 | exon | g11929.t1.exon6 | 19347824 | 19348084 |
| chr_1 | g11929 | g11929.t1 | cds | g11929.t1.CDS6 | 19347824 | 19348084 |
| chr_1 | g11929 | g11929.t1 | exon | g11929.t1.exon7 | 19348143 | 19348388 |
| chr_1 | g11929 | g11929.t1 | cds | g11929.t1.CDS7 | 19348143 | 19348388 |
| chr_1 | g11929 | g11929.t1 | exon | g11929.t1.exon8 | 19348706 | 19349644 |
| chr_1 | g11929 | g11929.t1 | cds | g11929.t1.CDS8 | 19348706 | 19349644 |
| chr_1 | g11929 | g11929.t1 | exon | g11929.t1.exon9 | 19349754 | 19350659 |
| chr_1 | g11929 | g11929.t1 | cds | g11929.t1.CDS9 | 19349754 | 19350659 |
| chr_1 | g11929 | g11929.t1 | exon | g11929.t1.exon10 | 19350709 | 19351617 |
| chr_1 | g11929 | g11929.t1 | cds | g11929.t1.CDS10 | 19350709 | 19351617 |
| chr_1 | g11929 | g11929.t1 | exon | g11929.t1.exon11 | 19351730 | 19352974 |
| chr_1 | g11929 | g11929.t1 | cds | g11929.t1.CDS11 | 19351730 | 19352974 |
| chr_1 | g11929 | g11929.t1 | exon | g11929.t1.exon12 | 19353212 | 19353281 |
| chr_1 | g11929 | g11929.t1 | cds | g11929.t1.CDS12 | 19353212 | 19353281 |
| chr_1 | g11929 | g11929.t1 | TSS | g11929.t1 | NA | NA |
Sequences
>g11929.t1 Gene=g11929 Length=5706
ATGTGCAAAAATAAATATCATATATTGATTTTAATTGTAATTTTGTTAAGCGGATATGAA
GTGCATTCTTCTACACTTTGTTACACTTGTGATGGTGATGAGAATTGCTTGCAACCAATA
TCATCCACTTCAACTATAAATTGCTCTTCATCTTGTTATATTGGCATTAATACGAATGGA
AAAACTGTCAGAGGTTGTTCAAGTGACTTTTCTAGCACAAATTTATGTTCAAGTTCAATA
AATTCATCGGCTCTTTGTTTTATGTGTGATCAAGATTATTGTAATTTTGCAGTTTATCCC
ACAAATAGAATTTCATGCAAAACATGTATTGGTCTGTCATGTCAAAATCTATTAACATTA
AATGAGAAAATTTGCAATAATTATAAACCAGTTGAAGCTTGTATCACAATTTTCAATCAA
GAAAATGAGGCAATTTATAGAGATTGTTATGCAGATGCCGCTAGCGGAACACAAGAATTT
TGTGATGATTCAAACAATCTTGAATGCTCGAAATGTCAGTTATCAAATTGTAATGTTGAC
ATTAAACGACGAGGAAGCAAGTGTTTCAAGTGCACAGGAGTTGAGTGTTTTGATCCATCA
ATAGCAGATATTGTAGACTGTCAATCAAGCTGCTATGTTGGAATTAATCAAGTCGGTCAA
ACTGTCAGAGATTGTTCAAGTTCATTGTTATCATGTGAAAATAACAATTTAGAGTGCCGT
GTATGTGATGAAGATTTTTGCAATTCCATTGCTTTTCCAATTAAAGAGCGACGTTCTTGT
ATTTCCTGTAGAGGTGATAACTGCTTATCAATGACTTCTTGGGAACAAAAATTTTGTGAA
ATTTACGGAAATAATGAGAAATGTGTGACTCTATTTGATTCAAAAAATAAAATAATTGAA
AAGGGCTGTTTATCAACTATTGTAAATGTTGACTTTAAAAATCAATCAATTTGTGACTTT
GATAATTGCAATATACAGAATTCAATTGAAGAAAATGAAGTGTGTATATCATGTAATTCA
GAAACAGATTCAAATTGCATAACAAATCCACTTCAAAGTGACCTTGTAGCATGTTCAACT
AATCAATGTTATTCAAGATTTCAAAACAATATCGTTGACAGAGGTTGTGAAAATTCTTTG
ACTTCTTCTTGTACTGAACCTGATTGTAAAATATGCATGGGAAGTAGATGCAACCAAAAT
ATAATTCCTTCTAATCGTCAGTCGTGCCATGTATGTAGTGGACTTGATTGTCTTGGAGAC
AGCCAAATTTGTCTTAGATCTGGTATTGGCGGATGTCTTACAATCTTCAATGAAGATTCA
AAAGCAATCTACAGAAACTGTTACTCAAATGTAAATGATGTCGTTCAATCTTTTTGCGAT
GATCCAACCAATTTGGAATGCACAAAGTGTGAAAATTCAAATTGCAATATTGATATGAAA
AGACGTGGGACTAAATGTTTTAAATGTTCAGGCATTGAGTGCTTTACAATTTCATCTTTA
TCAAATACTTTAAATTGTCAATCAGGATGTTTTGTTGGAATCAATGAATTTGGTTTAACT
GTTAGAGATTGTGCTAGTTCTTCATTAACTTGCTCTGAAAATGCATCATATTGTCAAGTA
TGTGAAAGTGATTTTTGCAATGGTATTACTTTCCCAATTCAAAATCGTCGAATCTGTTTG
AATTGTGTTGGTGATGACTGTCTAAATAATGATGAATCAAAATATTGCGAGAAATTTGGT
ACTTTTGAAAATTGTGTCACAGTTTTTGACTCAACTAATAAAGTATATGAGCGAGGTTGT
TCATCATCTTTATCTTTACCTTCAGCAAATAATACAAATCGATTAATGTGTAATTTTGAT
AAATGCAACACTCATAAAACTATGAATGAACAATTTTACTGTATTGGATGCAATTCTGAA
AATGATAAAAATTGTATTTTAAATCTAAGAAATACAAATTCAATAGCATGCACTACAAAT
GAATGCTATTCGAGGGTTTTAGAAAATGGAATCATTGAAAGAGGCTGTGCAACTGGTTTG
ACTACAACGTGTTCGAATGAAAATTGCCTAAAATGTAATCAAACGCTCTGCAACGATGTT
GAAGTCCCAAAAAATCGTCATTCGTGTTACAAATGTGAAGGATCAAGTTGTGCCAATATA
GTAGGACGAATTGAAACTTGTCTCAATCAAAATACTAACAGTTGTGTCACTATTTTTGGT
GAAGGATCTTTGCCAGTATACAGAAATTGTTACTCAGATGTAAACGAAATAGTTCAGTCT
TTATGTGACGATTCAGGCAATATTGACTGTGTGAAATGTAACTCTAAAAATTGCAATATA
CTAACAAGCAGAGCAGGAACGAAATGTTTTAAATGTAGCGGTCTGGAATGTTTTATTCCT
TCACTCTCAAATATTATTGATTGTAAATCGAGCTGCTATCTTGGTGTCGATAAAAATGGA
CAAACAGTTCGTGATTGTTCAAGTTCTTCGTTCGCTTGCACTGAAGGTTCAATGGATTGT
CTTGTCTGTAATGAAGATTTTTGCAATGGAATAACATTTCCTGTTATAAATCGAAGATCA
TGCATTAGATGCATAGGAAATGAATGTCAAAATTCAGATAATTCAATGTTTTGTCCGATT
TTCAATTCAGCTGAATTATGCACAACAGTTTTTGATTCTACAAATCAAATAATTGAAAGA
GGTTGCTCATCGTCTTTAACCTCAACTTCAGTAAATAATACAAACAAACTTAGCTGTAAT
TTTGATAACTGCAACACTCATAAAGCAATAAATCAAATTTTTTACTGTATCTCATGTGAC
TCTGATAATGATAAAAAATGCATAACTGACCCTAAACAAACAGCAACAATCACTTGTTCG
ACAAATGAATGCTATTCAAGACTTTTAACCAATGGAGTAGTACAAAGAGGTTGTGCATCA
ATTTTAACATCAAGTTGCTCAAATGAAAACTGTATAAAATGTAATGGAACTCAATGTAAT
TCAGTAAATGTGCCTAGTAGTCGTCAATCATGCTTAAAATGTAGTGGAAATAGTTGCAGT
TTGAACAACGCAATTATAGAAACTTGCTTGAATCATAACAATAACAACTGTATCACGATT
TTTGATCAGGATTCAAAACCCATTCTTCGTAATTGCTATTCAGATGTCAATGAAGTTGTT
CAATCAATTTGTGATGATGAAAATAATTTAGAATGTACAAAATGCACATCAAAAAACTGC
AATACTGTAATAAAAAGACGAGGAACAATCTGTCTTAAATGTAATGGTCAAGAATGTTTC
AATTCTGTAGTTGGATCAAATACAATTGCATGTCAAAGTAGTGGTTGTTATGTTGGGTTG
AATTCTCTTGGTGAAACCGTCCGTGGTTGCGCTTCAAGTTTTCAAAATTCATCAGTAATT
TGTGCGACAAATGACACTGATTCAAAAGCATGTCTCATTTGTAACGATGATTTTTGTAAC
GCAATTACTTATCCAACAAAAAATCGAGCACAATGTCATGTGTGTGTTGGCTCACAATGT
GCTGCAAATGAAGATAATTTGAGTTATTGTGGAAGATATCAAGAGAATTGTGTCACTGTT
TTTGATAATAATGAAGTGATAGAACGCGGATGTCTTTCAAGTCTCATAAATAAGCGTCAG
TGCGTATTACAAGCTAACAAGTGTAAAAGTTGTGGTCAAAATGGATGTAATAATATGACT
ACGCTATCTTCACAAGTTTGCATTAACTGTAACTCTCAAAATGACACAAATTGTGTTCAT
AATCCATCATTAGCGGGAATTAAATTCTGTTCATCTTCTGGTTGTTATACAAGACTTGTG
GATGGAAATTTGATCAGAGGTTGCAAGGAAGATCTTCAAAATTTTGTTTGCGATTCAACG
ACAAACTGTCAATCTTGCTCAAGTAATGACAAATGCAATTCTGGAAATTATCCTGATAAT
CGACTGTCATGTGTTTCATGTAGAAATGCAAGCGAATGTCAAAAACCAACGATGAAAAAA
TGTAACCTTTATAAATCAAATGATAAATGCGTTACTATTTTTGATAATTATAAACTAAGT
ATGAAAGGATGTTTGGCAGATCAATCTATAACTATTCAAAATCAATGTGCATCAAATAGT
TCAACATGTATTTCATGTTCAAATAACAACTGTAACACAGATGTTGTAAGACAAGATGAA
GCATGCATCGTTTGCAGTTCTGATGTTGACTCGAACTGTGCTCAAAAACCAAACACTTTA
TTTGCCAAAAAATGCTTCATTGTGAGCGATGGACAATGTTTCACAAGAATTCTTAATGGT
GTAACAATCCGTGGATGCAAAGGTGATTTATCATCTGCTATAATTTCTAATTGTAATGGA
GAAAATTGTACTCTATCAACTGGACAAGGCACAAATAAGAAAATTTTTCCCACCAAAAGA
TTAAAATGTCATCATTGTAACAGTCAAATTGATAAGAACTGTTCACAACCAAAAACAGAC
AAAGATGAAATTTTACCATGTAAAAAATATTCTGGTGTTGAAAAATGTATAATTATAAAA
TCATCAAGTGGAACTGTTCGAGGATGCGAAGCTGATTTTACTGAAAACATTTGCAATGGA
CAAAATTGTTTTACATGTAATGATAAAGATGTCGTTATTGCAACTTTCATCAGTCAAGTA
CATTTTAAGTTATTTCATTATAAAATGCCGGTTGATATCAAAACAGTTTTAGTATGTGAT
GCTGTTGATCAGTCATGCATCGATTTACTTAAATCAAATGAAATTTCTGTCGATTATAAG
CTTAAACTACCAAAAGAAGAGCTCTTACGTGAAGTCAAGAACTACGACGCCGTTATTGTT
CGTTCAGATACAAAAATTACAGCAGACGTCATCGCTTCAGGTGTAGAAGAAAAATTGCGA
GTAATCGGACGAGCTGGTGTGGGCGTTGATAACATTGATATTGATGCAGCTACAAAACAT
AATGTCATTGTACTCAACACTCCAGGCGGAAATTCAATTGCTGCGACTGAACTGACTTGT
TTACTACTTGCGGCACTGGGTCGACCAGTTTGCGCTGCTAATGCAAGCATGAAAGAAGGT
CGATGGGATCGAAAAATATATTCAGGAACAGAATTGTATGGAAAAACACTTGCAATTTTA
GGATTAGGCAGAATTGGTCGAGAAGTTGGCTTTAGAATGAAAGCATGGGGAATGAAAATA
ATTGGCTATGATCCCATCACTACTCATGAACAAGCTGCAGAATATGGCATTGAAAAAATG
GAACTTGATGAAATTTGGCCACTTGCCGATTATATTACATTGCATGTTCCATTGATTCCA
TCAACTAAAAATTTAATATCTTCCGATTCATTGAGCAAATGCAAAAATGGCGTAAAAGTC
GTAAATGTCGCTCGTGGAGGGGTAATAGATGAGGAAGCAATTTTCAAGGCACTAGAAAGC
GGAAAATGTGGTGGTGCTGCATTTGATGTTTACGAAGAAGAACCACCAAAAAAAGAAATT
ACAAAAAAGCTGATTGCTCATCCAAAAGTTGTCGCAACACCTCACTTAGGAGCAAGCACA
AAAGAAGCTCAAATCAAAGTTGCTGTTGAAGTTTCCGAGCAGTTTATTGCATTGACTGGA
AAATCTAAAGAATTTACGCAATATAATGGCGTTGTTAATCGTGAAATTTTAAAAACTTAT
TTTTGA
>g11929.t1 Gene=g11929 Length=1901
MCKNKYHILILIVILLSGYEVHSSTLCYTCDGDENCLQPISSTSTINCSSSCYIGINTNG
KTVRGCSSDFSSTNLCSSSINSSALCFMCDQDYCNFAVYPTNRISCKTCIGLSCQNLLTL
NEKICNNYKPVEACITIFNQENEAIYRDCYADAASGTQEFCDDSNNLECSKCQLSNCNVD
IKRRGSKCFKCTGVECFDPSIADIVDCQSSCYVGINQVGQTVRDCSSSLLSCENNNLECR
VCDEDFCNSIAFPIKERRSCISCRGDNCLSMTSWEQKFCEIYGNNEKCVTLFDSKNKIIE
KGCLSTIVNVDFKNQSICDFDNCNIQNSIEENEVCISCNSETDSNCITNPLQSDLVACST
NQCYSRFQNNIVDRGCENSLTSSCTEPDCKICMGSRCNQNIIPSNRQSCHVCSGLDCLGD
SQICLRSGIGGCLTIFNEDSKAIYRNCYSNVNDVVQSFCDDPTNLECTKCENSNCNIDMK
RRGTKCFKCSGIECFTISSLSNTLNCQSGCFVGINEFGLTVRDCASSSLTCSENASYCQV
CESDFCNGITFPIQNRRICLNCVGDDCLNNDESKYCEKFGTFENCVTVFDSTNKVYERGC
SSSLSLPSANNTNRLMCNFDKCNTHKTMNEQFYCIGCNSENDKNCILNLRNTNSIACTTN
ECYSRVLENGIIERGCATGLTTTCSNENCLKCNQTLCNDVEVPKNRHSCYKCEGSSCANI
VGRIETCLNQNTNSCVTIFGEGSLPVYRNCYSDVNEIVQSLCDDSGNIDCVKCNSKNCNI
LTSRAGTKCFKCSGLECFIPSLSNIIDCKSSCYLGVDKNGQTVRDCSSSSFACTEGSMDC
LVCNEDFCNGITFPVINRRSCIRCIGNECQNSDNSMFCPIFNSAELCTTVFDSTNQIIER
GCSSSLTSTSVNNTNKLSCNFDNCNTHKAINQIFYCISCDSDNDKKCITDPKQTATITCS
TNECYSRLLTNGVVQRGCASILTSSCSNENCIKCNGTQCNSVNVPSSRQSCLKCSGNSCS
LNNAIIETCLNHNNNNCITIFDQDSKPILRNCYSDVNEVVQSICDDENNLECTKCTSKNC
NTVIKRRGTICLKCNGQECFNSVVGSNTIACQSSGCYVGLNSLGETVRGCASSFQNSSVI
CATNDTDSKACLICNDDFCNAITYPTKNRAQCHVCVGSQCAANEDNLSYCGRYQENCVTV
FDNNEVIERGCLSSLINKRQCVLQANKCKSCGQNGCNNMTTLSSQVCINCNSQNDTNCVH
NPSLAGIKFCSSSGCYTRLVDGNLIRGCKEDLQNFVCDSTTNCQSCSSNDKCNSGNYPDN
RLSCVSCRNASECQKPTMKKCNLYKSNDKCVTIFDNYKLSMKGCLADQSITIQNQCASNS
STCISCSNNNCNTDVVRQDEACIVCSSDVDSNCAQKPNTLFAKKCFIVSDGQCFTRILNG
VTIRGCKGDLSSAIISNCNGENCTLSTGQGTNKKIFPTKRLKCHHCNSQIDKNCSQPKTD
KDEILPCKKYSGVEKCIIIKSSSGTVRGCEADFTENICNGQNCFTCNDKDVVIATFISQV
HFKLFHYKMPVDIKTVLVCDAVDQSCIDLLKSNEISVDYKLKLPKEELLREVKNYDAVIV
RSDTKITADVIASGVEEKLRVIGRAGVGVDNIDIDAATKHNVIVLNTPGGNSIAATELTC
LLLAALGRPVCAANASMKEGRWDRKIYSGTELYGKTLAILGLGRIGREVGFRMKAWGMKI
IGYDPITTHEQAAEYGIEKMELDEIWPLADYITLHVPLIPSTKNLISSDSLSKCKNGVKV
VNVARGGVIDEEAIFKALESGKCGGAAFDVYEEEPPKKEITKKLIAHPKVVATPHLGAST
KEAQIKVAVEVSEQFIALTGKSKEFTQYNGVVNREILKTYF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 32 | g11929.t1 | CDD | cd12173 | PGDH_4 | 1576 | 1881 | 1.09777E-153 |
| 25 | g11929.t1 | Gene3D | G3DSA:3.40.50.720 | - | 1576 | 1868 | 1.1E-112 |
| 26 | g11929.t1 | Gene3D | G3DSA:3.40.50.720 | - | 1667 | 1859 | 1.1E-112 |
| 20 | g11929.t1 | PANTHER | PTHR42938:SF5 | D-3-PHOSPHOGLYCERATE DEHYDROGENASE | 1571 | 1897 | 1.7E-131 |
| 21 | g11929.t1 | PANTHER | PTHR42938 | FORMATE DEHYDROGENASE 1 | 1571 | 1897 | 1.7E-131 |
| 8 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 27 | 150 | 1.8E-13 |
| 3 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 133 | 228 | 8.4E-7 |
| 14 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 205 | 308 | 7.2E-14 |
| 17 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 338 | 418 | 1.1E-8 |
| 16 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 493 | 605 | 1.3E-10 |
| 11 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 610 | 684 | 2.9E-5 |
| 2 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 637 | 736 | 7.9E-8 |
| 1 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 716 | 829 | 6.1E-7 |
| 5 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 806 | 910 | 4.0E-11 |
| 4 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 912 | 986 | 2.1E-5 |
| 7 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 939 | 1043 | 1.3E-10 |
| 10 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 1027 | 1139 | 3.4E-10 |
| 9 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 1091 | 1223 | 1.6E-13 |
| 13 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 1190 | 1270 | 2.5E-6 |
| 6 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 1250 | 1368 | 2.3E-16 |
| 15 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 1347 | 1437 | 7.3E-10 |
| 12 | g11929.t1 | Pfam | PF05444 | Protein of unknown function (DUF753) | 1412 | 1547 | 1.7E-18 |
| 19 | g11929.t1 | Pfam | PF00389 | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | 1576 | 1878 | 2.9E-33 |
| 18 | g11929.t1 | Pfam | PF02826 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | 1682 | 1857 | 6.1E-55 |
| 28 | g11929.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 23 | - |
| 29 | g11929.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 7 | - |
| 30 | g11929.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 8 | 18 | - |
| 31 | g11929.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 19 | 23 | - |
| 27 | g11929.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 24 | 1901 | - |
| 33 | g11929.t1 | ProSitePatterns | PS00065 | D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. | 1717 | 1744 | - |
| 23 | g11929.t1 | SUPERFAMILY | SSF52283 | Formate/glycerate dehydrogenase catalytic domain-like | 1575 | 1707 | 6.8E-30 |
| 22 | g11929.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1675 | 1857 | 7.65E-50 |
| 24 | g11929.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 23 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | MF |
| GO:0051287 | NAD binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
- This transcript has been annotated with K00058 (D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed