Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11945 g11945.t1 TTS g11945.t1 19561640 19561640
chr_1 g11945 g11945.t1 isoform g11945.t1 19562556 19563537
chr_1 g11945 g11945.t1 exon g11945.t1.exon1 19562556 19562891
chr_1 g11945 g11945.t1 cds g11945.t1.CDS1 19562556 19562891
chr_1 g11945 g11945.t1 exon g11945.t1.exon2 19562945 19563089
chr_1 g11945 g11945.t1 cds g11945.t1.CDS2 19562945 19563089
chr_1 g11945 g11945.t1 exon g11945.t1.exon3 19563146 19563204
chr_1 g11945 g11945.t1 cds g11945.t1.CDS3 19563146 19563204
chr_1 g11945 g11945.t1 exon g11945.t1.exon4 19563280 19563328
chr_1 g11945 g11945.t1 cds g11945.t1.CDS4 19563280 19563328
chr_1 g11945 g11945.t1 exon g11945.t1.exon5 19563383 19563442
chr_1 g11945 g11945.t1 cds g11945.t1.CDS5 19563383 19563442
chr_1 g11945 g11945.t1 exon g11945.t1.exon6 19563503 19563537
chr_1 g11945 g11945.t1 cds g11945.t1.CDS6 19563503 19563537
chr_1 g11945 g11945.t1 TSS g11945.t1 19563567 19563567

Sequences

>g11945.t1 Gene=g11945 Length=684
ATGACAAAACCAACTTTATATTATCATCCAGGAAGCCCACCTGCAAGGGCTTGTGTTATG
GTTGCTCGAGAAATTGGTTTAGATATTGAACTAAAATTAATTGATTTTCAATCCATGGAA
CATACGAGTGAAGCATACTCTAAAATCAACCCAGCACAAACAGTTCCATCATTTTCTGAT
AACAATTTTATTATAAATGACAGTCATGCAATTTGTCTTTATATGATCGAAAAGTATGCA
AAAAGTGATCAGCTTTATCCTAAAAATAATCCTAAATTACGAACAATCATCAATGATCGT
TTATTTTTTGATGCAAGTTTTTTATTTCCACGTGGTTACAATATTATGTATCCGGTTTTT
ATACTTGGTCAATCATCAATTCCTAAAGAAATGGTTAATCAGATTTATCGTGCTTACAAA
GTTGTTGAAAGATTTCTTACAAATTCAAAATGGATTGCAACAAATGATCAGATGACTTTA
GCAGACATTGCAATGTTTGCTTGGTTTGAAGCATTCACTCGATTGTTTACTATCGAAAAC
TATCCAAAAATAGCTGTTTGGCTTAGTAGAATGAGAAATTTAGATTCATATGAAGAAATG
AAAATTGGTGCTAAACAACAAGCTGATCAATTTTTAACTGTGATGGAACAGAATAAAATT
TTCTCAACATTTGGACAAAAGTAA

>g11945.t1 Gene=g11945 Length=227
MTKPTLYYHPGSPPARACVMVAREIGLDIELKLIDFQSMEHTSEAYSKINPAQTVPSFSD
NNFIINDSHAICLYMIEKYAKSDQLYPKNNPKLRTIINDRLFFDASFLFPRGYNIMYPVF
ILGQSSIPKEMVNQIYRAYKVVERFLTNSKWIATNDQMTLADIAMFAWFEAFTRLFTIEN
YPKIAVWLSRMRNLDSYEEMKIGAKQQADQFLTVMEQNKIFSTFGQK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g11945.t1 CDD cd03177 GST_C_Delta_Epsilon 92 199 0.0000000
8 g11945.t1 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 80 0.0000000
7 g11945.t1 Gene3D G3DSA:1.20.1050.10 - 81 221 0.0000000
3 g11945.t1 PANTHER PTHR43969:SF4 FI01423P-RELATED 1 213 0.0000000
4 g11945.t1 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 213 0.0000000
2 g11945.t1 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 81 0.0000000
1 g11945.t1 Pfam PF00043 Glutathione S-transferase, C-terminal domain 128 194 0.0000002
10 g11945.t1 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 2 83 20.8300000
9 g11945.t1 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 90 211 14.4850000
12 g11945.t1 SFLD SFLDG01153 Main.4: Theta-like 3 211 0.0000000
13 g11945.t1 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 3 211 0.0000000
5 g11945.t1 SUPERFAMILY SSF52833 Thioredoxin-like 1 88 0.0000000
6 g11945.t1 SUPERFAMILY SSF47616 GST C-terminal domain-like 90 200 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed