Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11945 g11945.t2 TTS g11945.t2 19561640 19561640
chr_1 g11945 g11945.t2 isoform g11945.t2 19562184 19563537
chr_1 g11945 g11945.t2 exon g11945.t2.exon1 19562184 19562891
chr_1 g11945 g11945.t2 cds g11945.t2.CDS1 19562556 19562891
chr_1 g11945 g11945.t2 exon g11945.t2.exon2 19562945 19563537
chr_1 g11945 g11945.t2 cds g11945.t2.CDS2 19562945 19563070
chr_1 g11945 g11945.t2 TSS g11945.t2 19563567 19563567

Sequences

>g11945.t2 Gene=g11945 Length=1301
ATGACAAAACCAACTTTATATTATCATCCAGGAAGGTAAAAATATTTTCATATTTTATTA
TTCAATAATATTTTAAAAAACTTATGATTGTTTAGCCCACCTGCAAGGGCTTGTGTTATG
GTTGCTCGAGAAATTGGTTTAGATATTGAACTAAAGTAAGAAACAATAAGAAAGACATTT
CAAAAACATTTAATGTTTATAATTTTTAGATTAATTGATTTTCAATCCATGGAACATACG
AGTGAAGCATACTCTAAAGTAATTATCTATTTCAATAAATTTAAAAAGTATTTTCTTTTG
CTGATAATAAAAATGAACTTTAATGAACTTTAGATCAACCCAGCACAAACAGTTCCATCA
TTTTCTGATAACAATTTTATTATAAATGACAGGTAAGTTTCTTTTCACATTTAAATTCAT
TAAATCTTTTTAAATTTAATTTCCATAGTCATGCAATTTGTCTTTATATGATCGAAAAGT
ATGCAAAAAGTGATCAGCTTTATCCTAAAAATAATCCTAAATTACGAACAATCATCAATG
ATCGTTTATTTTTTGATGCAAGTTTTTTATTTCCACGTGGTTACAATATTATGTATCCGG
TTTTTATACTTGGTCAATCATCAATTCCTAAAGAAATGGTTAATCAGATTTATCGTGCTT
ACAAAGTTGTTGAAAGATTTCTTACAAATTCAAAATGGATTGCAACAAATGATCAGATGA
CTTTAGCAGACATTGCAATGTTTGCTTGGTTTGAAGCATTCACTCGATTGTTTACTATCG
AAAACTATCCAAAAATAGCTGTTTGGCTTAGTAGAATGAGAAATTTAGATTCATATGAAG
AAATGAAAATTGGTGCTAAACAACAAGCTGATCAATTTTTAACTGTGATGGAACAGAATA
AAATTTTCTCAACATTTGGACAAAAGTAAAAATTTTAAAATTACAACTTAAATATAACGA
GCATAAAGTTTTTGAGATTTGTCTTTATCAAGTCAATTTATTTGCCTTTAAAAAAAAATT
CAAAATTGTTATATTTTTTTATGACAGTTTTAAAAAAATTATTACTGTTATAAAACTTTT
GTGTCATAAAAATTTTTATAACGCTTCTAAATTTTCTTTTAGGCTAATAAATTTAACTTT
ATAGACACATCTCAAAAAAACTTTATATCAGATATAAAATATTTTTCTGCAGAACTTTCA
AAATTATGTTTAATGATTTAATTTTGATTTTATGTTCATCAAAATGATTTCAAACAAGTT
TTAATATTTAAAATTAATACGGATTATCAAAAAAGCACAAA

>g11945.t2 Gene=g11945 Length=153
MIEKYAKSDQLYPKNNPKLRTIINDRLFFDASFLFPRGYNIMYPVFILGQSSIPKEMVNQ
IYRAYKVVERFLTNSKWIATNDQMTLADIAMFAWFEAFTRLFTIENYPKIAVWLSRMRNL
DSYEEMKIGAKQQADQFLTVMEQNKIFSTFGQK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g11945.t2 CDD cd03177 GST_C_Delta_Epsilon 18 125 0.0000000
5 g11945.t2 Gene3D G3DSA:1.20.1050.10 - 7 147 0.0000000
2 g11945.t2 PANTHER PTHR43969:SF4 FI01423P-RELATED 2 139 0.0000000
3 g11945.t2 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 2 139 0.0000000
1 g11945.t2 Pfam PF00043 Glutathione S-transferase, C-terminal domain 54 120 0.0000001
6 g11945.t2 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 16 137 14.4850000
4 g11945.t2 SUPERFAMILY SSF47616 GST C-terminal domain-like 16 126 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed