General information for g11970.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein lap4.
Parent gene
- The parent gene g11970 is located on chr_1: 20007751..20020803 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11970 | g11970.t2 | TSS | g11970.t2 | 19963419 | 19963419 |
| chr_1 | g11970 | g11970.t2 | isoform | g11970.t2 | 19964332 | 20004378 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon1 | 19964332 | 19964493 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS1 | 19964332 | 19964493 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon2 | 19969370 | 19969487 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS2 | 19969370 | 19969487 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon3 | 19973977 | 19974145 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS3 | 19973977 | 19974145 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon4 | 19974980 | 19975393 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS4 | 19974980 | 19975393 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon5 | 19975464 | 19975830 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS5 | 19975464 | 19975830 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon6 | 19975894 | 19975945 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS6 | 19975894 | 19975945 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon7 | 19976797 | 19976871 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS7 | 19976797 | 19976871 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon8 | 19977143 | 19977357 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS8 | 19977143 | 19977357 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon9 | 19977486 | 19977611 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS9 | 19977486 | 19977611 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon10 | 19977683 | 19977995 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS10 | 19977683 | 19977995 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon11 | 19981605 | 19981694 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS11 | 19981605 | 19981694 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon12 | 19982101 | 19982605 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS12 | 19982101 | 19982605 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon13 | 19982665 | 19982797 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS13 | 19982665 | 19982797 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon14 | 19982908 | 19983091 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS14 | 19982908 | 19983091 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon15 | 19983186 | 19983523 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS15 | 19983186 | 19983523 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon16 | 19984287 | 19984571 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS16 | 19984287 | 19984571 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon17 | 19986804 | 19986914 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS17 | 19986804 | 19986914 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon18 | 19987076 | 19987255 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS18 | 19987076 | 19987255 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon19 | 19987651 | 19988241 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS19 | 19987651 | 19988241 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon20 | 19988308 | 19988520 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS20 | 19988308 | 19988520 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon21 | 19996700 | 19998691 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS21 | 19996700 | 19998691 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon22 | 19999498 | 19999609 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS22 | 19999498 | 19999609 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon23 | 20002039 | 20002309 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS23 | 20002039 | 20002309 |
| chr_1 | g11970 | g11970.t2 | exon | g11970.t2.exon24 | 20004339 | 20004378 |
| chr_1 | g11970 | g11970.t2 | cds | g11970.t2.CDS24 | 20004339 | 20004378 |
| chr_1 | g11970 | g11970.t2 | TTS | g11970.t2 | NA | NA |
Sequences
>g11970.t2 Gene=g11970 Length=7056
ATGTTTAAGTGCATTCCCATATTCAAAGGATGTAATCGACAAGTGGAGTTTGTGGATAAA
AGACACTGCTCCTTACCAAATGTTCCCGAGGAAATTTTACGCTATTCAAGGAGTCTCGAG
GAATTGCTACTTGATGCAAATCATATTCGAGATTTGCCCAAGAATTTTTTCCGATTACAT
CGATTACGAAAGCTCGGCCTGAGTGACAATGAAATTCATAAACTTCCACCTGATATACAA
AATTTTGAAAATCTTGTAGAATTAGACGTATCAAGAAATGATATTCCTGACATTCCAGAT
GACATTCGCCATTTACGGCTTTTACAGATTGCTGATTTCAGCTCAAATCCTATTCCAAAA
TTACCAGCTGGTTTCTCACAGCTTAAAAGTTTGACAATATTAGGATTAAATGACATGTCC
TTGACCTCATTGCCAGCTGATTTTGGATGCTTAACACAATTGGAGTCACTAGAATTGCGC
GAAAATCTTCTTAAAAATCTTCCCGAGTCAATAAGTCAGTTAACAAAACTCGAGCGTTTA
GATTTGGGCGATAATGAAATAGAAGAATTGCCGCCACATTTGGGTGATTTACCATCACTG
CAAGAACTATGGCTCGATCATAATCAATTGCAGCGACTGCCGCCCGAAATTGGTAAACTA
AAGAATCTTATGTGTTTGGATGTGTCAGAAAATCGTCTTGAAGATTTACCTGAAGAAATT
GGAGGCTTAGAAAATCTTACTGATTTGCACTTGTCACAAAATCTTCTTGAATTTATACCA
AATGGTATTGAGAAGTTGACTAAATTGACAATATTAAAGTTGGACCAAAATCGCTTGCAT
GTTCTTAATGAAAGCATTGGAATGTGTGAAAATATGCAAGAGCTTATTCTAACTGAGAAC
TTTCTTATCGAATTGCCAAGCTCAATTGGGCGGATGTCGAAATTGAATAATTTAAATGTC
GATAGGAATTCACTCGTATCGGTGCCGTCGGAAATTGGCAATTTGACCAATTTAGGTGTG
CTGAGTTTGCGGGACAATAAATTATCGAAATTGCCATCCGAGCTTGGCAATTGTGGTGCA
CTACATGTTCTCGATGTGTCGGGCAATCGACTTCAATATTTGCCATATTCGTTAGTTAAT
TTACAACTTAAAGCTGTTTGGTTGTCAGAAAATCAAGCGCAGCCATTGTTGACTTTTCAA
CCTGATACTGATGAAGCAACGGGCGAGCAGGTTCTAACCTGCTTCTTGTTGCCACAACAA
GAAATGCAACCCGTTAGTCCAGAAGATTTAGCACCGGGAAGATTATATCGATCAAATCAA
AAATTCGGTTCAATGGATTTGTCTGATATAACGCAAGATAATCGTGAAGAGTCTGATAAT
GAAGATTGGCAAGCACGGGAAGAATCACGAACACATTCGGTAAAGTTTAGCGAGGATTCA
GCTACTGATAAAGAGACACCGTTTGTAAGGCAAAATACACCACATCCGAAGGAGCTAAAG
CTCAAAGCACACAAACTTTTTTCAAAAGACAAGAAGGATGACGACTCAAATTTGCAGCCC
CTGTCAGAAGAGTCACAACGCACAGAAAATGGTGAAACACCGACAGTTGAAAATAAATTT
GAAATGAATCATGCATATCATCAAGATGTGTCATCAACAGTTGCGCACACAGAAAATCAA
ATCATATCGACTAACGATGAGTCGGGTGAAAAGCGTGTTGGATTTCATGATGATGACAAC
CGAAATGAAGAGGAAGAGGAAGAAAATGACAAACGACCCGTATCAAAATTACATCGTCGT
GATACACCACATCATTTGAAAAATAAGCGTGTTCAGCAACATTTAAATGATAAAGCGGCA
AATGTGATTCTAAGTAGATTAAAAGAAAAACCGATACCAACAGTTGAAGAAATTGCGAAT
GCAGAAAATGCAATGCCTTTAGTGCAAGATGTTGGATTACCAATTGTCGATGTAAATCAG
AATGGAATTGAAATATCAGCAAACTTAAATGATTCCACAGATGCACTTACTGCATTGAAA
GAAGAAAGATTGGAGATTCATATTGAACGAACATCTGCTGGTCTTGGATTGAGTATTGCA
GGTGGAAAAGGTTCAACACCATACAAAGGCGATGATGAAGGAATTTTCATTTCACGTGTA
ACCGAAGGTGGTCCAGCAGATCTCGCTGGTTTACGTGTCGGTGATAAAGTATTAAAAGTT
AATGGTGTGTCAGTACATGACGCTGATCATTATGACGCAGTTGAAGTGCTAAAAGCATGT
GGTGCAGTTTTAGTGCTACTAGTTTCGCGTGAAGTTACTCGACTTGTTGGACATCCAGTA
TTCCTTGAAAATGGAGAACTTGCAAAAATTGCTATTGATCGTAAAGAAAATGGTGGCATT
GGAAAAATTATCCCCGCACCAATTCAAATTCAACCGCAACAACAACAATTCACAAGTGAA
ACACCACATTCCGCTCCAATTCTGGACACTTCTTCAAGTCATCATGCAGTCGCTAGTCAT
ATTCTGCATGGTAATACTTCAGATGTCGTTCATAAAGTAACACTACACACCACACTCATT
AGGGATCAAATTGGTCAGGGACTAGGTTTCTCAATAGCTGGCGGTAAAGGCCATCAACCA
TTTGTCGATGGATCAGATGGCATATATATTTCACGACTAACTGAAGGTGGCATTGCACAG
CGCGATGGGAAAGTGCAAGTTGGTGATCGTATTTTAGCGATTAACGGTGTGGATATGCGC
GCAGCTAATCATGATCATGCCGTGCAGTTACTAACCGATACACAAAGATTCGTTCGACTT
GTGATTGAACGCGAGGTTAAGGGACCAATTGAACCACCTCAAAGTCCTCGAAGTCCGCTA
CTTAAAGGATTAAGTCCAACTGGATATATGGCTAATAGGCCGACATACACGGGTTACAGA
CGATCAATTGGAGATGTTTTAGAAACGGGAAATGACACCTTTAACAAAAGCAAAGAAGTA
GAAGTAGAACATCATAATAACAATAACAGCACATTAAAAACAACAGCCACAATTCTAACA
CACAACACAACTTCATCAGCTGAAAAAATTCAACCACAGCAACAGCAGCAAAATCAAGAA
CTGACATCATCAGAAGCATTCATTAAAAATGAGCAACAACAAGCTGCACCACAACCAGCA
CCAAGAACTCGATTATCATCACAAAATTCAATTCCAATGACGAATGGAAGCAGTAATCTT
AAGAGTGATGATCCAGCACAGGCACCGCCACGTCCAATGACGAGTGATGATTTCCAAGCG
ATGATTCCAAAGCATTTTCTTAGTGGTGACAAAAGTATTGAAGTGCAAAAAACGTCACCG
ATTGTAGAGCAAGGAGCATCGGCTGTTACAGTAACAGTCAAAAAAGGACAATCAGATTTG
CCAATGCTGCCACCGGCACCAACTGAGCTTGGACTTGTTACTGAAACCATCACAAAATCC
ACATTCACTGAAACTGTAATGACACGTGTCACAGATAATCGTTTAATGGAACCATTAATT
AGTGAGGAAGTAGTGCTACCGAAAAATCAAGGACCATTAGGATTTTCAATCATCGGTGGA
ACCGATCATTCGTGTGTACCTTTTGGAGGCAGAGATCCAGGAATTTTCATATCACATATT
GTTCCCGGTGGAATAGCTGCACAATGTGGTAAACTTCGAATGGGTGATCGTATATTGCGA
GTTAATGGCACAGATGTGACAAGTGCAACACATCAAGAAGCTGTAATGGAATTATTGAGA
CCGTGCGAAGAAATTAAATTAACTGTTCAACATGATCCATTACCAGCTGGTTTCCAGGAA
GTAACGATCGTAAAAGGCGAAGGCGAACGTCTGGGTATGCATATTAAAGGTGGCCTCAAA
GGACAACGTGGCAATCCACTTGATGCAAACGACGAAGGTGTTTTCATATCAAAAATTAAC
AGTACTGGTGCTGTACGACGCGATGGTCGTTTAAAAGTTGGCATGCGAATTCTTGAGGTC
AATGGACAGTCATTGCTTGGTGCAACTCATCAAGAAGCAGTCGATAGTTTACGTTTGAGT
GCAAATCGTTTGAACTTGGTCGTATGCAAGGGTTATGAAAAATCAGATTTAATTCATGGA
ATGATCTCATCTGGAACTGGCAGTCGCTTGAGCAGTCGAGCATCAGAGACTGGTTCAGAA
ATGAGTTTGGATCAGGATGATTTTGAGCATTCAACTGTAATACAAAACTCACATGCTGAA
GGTTTACACAATAAATCAACTGAAGACGTATTCGAGGAAGGACGTAGTGAAGAGATAGTA
AATACGAGTCAAGAGATTGCTCGTCTCGCTAACGAGGTTGCATTACTCAGTCAGGCAGAA
AATGATACTGCATTGGTCAAGGCAAAGGAAAAGAGCACACCTGAAAAGGTATTGGATATT
GTTCGTGCAGCAGAATCGTTAGCGCTGAGCGAAGTAATTCCACCAAAATCACCAGTTGAT
CATCATCATGAAACATTACAAAAGACTACAACAATTGTGATGTCAAAACACACGCTCGAC
ACACTCAATACAGCCACGAGTGCTGATTCGCAGCAATCATCATCGCTACAGCAACAGCCC
ATGCAAACGACACCATCACAGATTGAAAGCGTTCAACCAACGAATATCACTAACATTCCT
TCCTCCGCTCAAGTAACTGGAATGAAAAGTTCAATGCATGAAAATCTTTCTGTTAATTCT
GCTCCTAAAAACACTTCTACACCCTCAATGATGCTGAAATCCTCAACATCACATTTGCCA
TATACAGCAAGTAATGTTGATGAATTTCTTCAAAAGAACTTTGTCGAACAACAAAAACGT
GAACGCGTGCTGTCAAGTAGCAGTGAGGATAATTTTGATTATGAGCCATATTCACGTCGA
GAATTTCGTATGGACTTGAAGGGAGTGACGGCAGAAGATAAAGACACGCCAACATCTGGC
TATCATACTTCGCCTAATGAGCATGAGAAATGGCCTCAGAATCAAGGCATAATGAGTCCT
GAGAGCAGTGATTATGAAAAATTCGATCATTCTCAAAGGAATGCAACATATCGCAAGTCA
GTCAGCTTCGATTTAGATGTTGAAGTTGATGAAGAAAAAACCGAAGAAAAGAAGCAACAG
CAGCAGCCGAAAAAGATTAAAAGTATCTTGCGTTCTCCCAGTCCGAGTGTTTATAGCACA
CCAATACCACCGCCATTAATCCCAACAGATGATGATGATGATGAAGATGAGGATTTAGAT
GAAGGCAGTGACAATCCCTTTAAAAAAGAATTCACAGAAATGGCACTTAAAGCCATTTGT
CCTATTTCTGATTCTGACAATTCTGATAGTCAACAAATTTCTGAAAATAATTTAAATCGA
TCAACGACATCAAAAATTCCAGTTTCAAAGACAATTTTTAAAGCGACAGCAAATCTTGTT
GAGCCTGTTAAAACTAAAACTCCTCCACCACGTCCACCAAAACCACAAGTAAAACGAGCT
GAAATGAAAAAGAATGAAGGTTTGGAGAAGCTAAGTCAACAAATGGACGATGAAGATTTC
TTGGAATTTGTTCATGACGTTCAGACCAATACAATTCAAGAAATTGCTCCATTCAATCCT
GAGAGTAGTCCATTGCCACCACTTCCCAAACTTCCTCCTCCTTCTCTTAAATCTTTCAAA
CGAACAGGCAGTCTCGAGAGACCAAAAGAAAGCCCTCCACCACCACCAACTCCGATTTTG
AAATGTCAACCGGAAATTGTTGAAATTCTTCCCGCTAAATTTGATACATTCCCACGCAAA
CAAACTGCCAATTTTGTCAATGAAAATTCAGCAACAAATGTGCTTGTCACTGAGGAAGAA
CATCGTGAGATTTTATTGACCGAGAATGAAATTCGTAATGCAATGCTTTATGAGTATGTT
GATGATAAAAATCTACAATCTAAATCTGAATTATTGAATCCAAATTTTTCTTCCAACAAT
CCTTTCTTGGACACTGACACAATTGCATCATCTACCTCGACTTTTAGCTATCAAAGTTCA
CCAAATATCATGTCACCGACATCAACACTCGAACGATCAAGCGAGAGCACTTATACACCA
ATTTATAGCGCTCCACAAGTGCTACCCGTTCACTATGGTCAATTGCCAAAGCCTCAACAT
ACGGGCTACCTTGTTGCCCTTCCACAGCAACAATATGTCATTCAACAGCCTCAGCAACAA
CAACAACAGCCAATTTTGGTGAGTGGTGATGGTCAAAATCCATTCTATGTTACTAATAGC
TATAGCAATAACACAATTGCAAATAATCATCATCAAACATTATTAATGCAATCGGCTTAT
ATGCCAGCACCATCACCACTTGCGTCATATAATAGAACAATTCACACACAACAGCAACAA
CAATCACAATTTGTTTATGAGCATGAACAACCACAACAAACTAGTTTTTATTCTAATTTT
AATAGTAATAGTGTTAATATGCAGCAACAACAAATGAATTATTCAGAATTATCACCGATT
AAAGTTAATCAAGTACAACAACACTTTGTATATGCAAAAGACAGCGATCAACAGAAATCA
CCTCAAATGACTTCGTTTGGGAAGCAAACTGAATCACCAACACCACCATCATCTGTAAAA
GCAGAAACACCGAAAACAGTATCAGATAAGAAGCGATTTTTTGAGCATGTAATGGAAGAT
CAACAAAAACCAACACCTAAATCAGACAAATCCTTCTCGTTTCTATCTGAGGACGAAATT
GAGAAACTGAGGCAAGAGAATGAAAAGAAAATTGCAACGATAACGCGTGAAACAAAGAAA
AAGATTGCATCAGCAATGGCTACTGGAGTGACAGCAAGTGATGACAACATTAACAACAAT
GATCAATTTAATGACAATGTCAATGAAGACGATGAAGAATTTTATAGTAAAAATAAAAAT
CTTATCATTAGTCAACATGTCATGAATACTGAGATTGATGATGACACTAATAATAGAAAT
CCACTAGAGGCACTGGAAGCAGTATTTCGCAGCTAA
>g11970.t2 Gene=g11970 Length=2351
MFKCIPIFKGCNRQVEFVDKRHCSLPNVPEEILRYSRSLEELLLDANHIRDLPKNFFRLH
RLRKLGLSDNEIHKLPPDIQNFENLVELDVSRNDIPDIPDDIRHLRLLQIADFSSNPIPK
LPAGFSQLKSLTILGLNDMSLTSLPADFGCLTQLESLELRENLLKNLPESISQLTKLERL
DLGDNEIEELPPHLGDLPSLQELWLDHNQLQRLPPEIGKLKNLMCLDVSENRLEDLPEEI
GGLENLTDLHLSQNLLEFIPNGIEKLTKLTILKLDQNRLHVLNESIGMCENMQELILTEN
FLIELPSSIGRMSKLNNLNVDRNSLVSVPSEIGNLTNLGVLSLRDNKLSKLPSELGNCGA
LHVLDVSGNRLQYLPYSLVNLQLKAVWLSENQAQPLLTFQPDTDEATGEQVLTCFLLPQQ
EMQPVSPEDLAPGRLYRSNQKFGSMDLSDITQDNREESDNEDWQAREESRTHSVKFSEDS
ATDKETPFVRQNTPHPKELKLKAHKLFSKDKKDDDSNLQPLSEESQRTENGETPTVENKF
EMNHAYHQDVSSTVAHTENQIISTNDESGEKRVGFHDDDNRNEEEEEENDKRPVSKLHRR
DTPHHLKNKRVQQHLNDKAANVILSRLKEKPIPTVEEIANAENAMPLVQDVGLPIVDVNQ
NGIEISANLNDSTDALTALKEERLEIHIERTSAGLGLSIAGGKGSTPYKGDDEGIFISRV
TEGGPADLAGLRVGDKVLKVNGVSVHDADHYDAVEVLKACGAVLVLLVSREVTRLVGHPV
FLENGELAKIAIDRKENGGIGKIIPAPIQIQPQQQQFTSETPHSAPILDTSSSHHAVASH
ILHGNTSDVVHKVTLHTTLIRDQIGQGLGFSIAGGKGHQPFVDGSDGIYISRLTEGGIAQ
RDGKVQVGDRILAINGVDMRAANHDHAVQLLTDTQRFVRLVIEREVKGPIEPPQSPRSPL
LKGLSPTGYMANRPTYTGYRRSIGDVLETGNDTFNKSKEVEVEHHNNNNSTLKTTATILT
HNTTSSAEKIQPQQQQQNQELTSSEAFIKNEQQQAAPQPAPRTRLSSQNSIPMTNGSSNL
KSDDPAQAPPRPMTSDDFQAMIPKHFLSGDKSIEVQKTSPIVEQGASAVTVTVKKGQSDL
PMLPPAPTELGLVTETITKSTFTETVMTRVTDNRLMEPLISEEVVLPKNQGPLGFSIIGG
TDHSCVPFGGRDPGIFISHIVPGGIAAQCGKLRMGDRILRVNGTDVTSATHQEAVMELLR
PCEEIKLTVQHDPLPAGFQEVTIVKGEGERLGMHIKGGLKGQRGNPLDANDEGVFISKIN
STGAVRRDGRLKVGMRILEVNGQSLLGATHQEAVDSLRLSANRLNLVVCKGYEKSDLIHG
MISSGTGSRLSSRASETGSEMSLDQDDFEHSTVIQNSHAEGLHNKSTEDVFEEGRSEEIV
NTSQEIARLANEVALLSQAENDTALVKAKEKSTPEKVLDIVRAAESLALSEVIPPKSPVD
HHHETLQKTTTIVMSKHTLDTLNTATSADSQQSSSLQQQPMQTTPSQIESVQPTNITNIP
SSAQVTGMKSSMHENLSVNSAPKNTSTPSMMLKSSTSHLPYTASNVDEFLQKNFVEQQKR
ERVLSSSSEDNFDYEPYSRREFRMDLKGVTAEDKDTPTSGYHTSPNEHEKWPQNQGIMSP
ESSDYEKFDHSQRNATYRKSVSFDLDVEVDEEKTEEKKQQQQPKKIKSILRSPSPSVYST
PIPPPLIPTDDDDDEDEDLDEGSDNPFKKEFTEMALKAICPISDSDNSDSQQISENNLNR
STTSKIPVSKTIFKATANLVEPVKTKTPPPRPPKPQVKRAEMKKNEGLEKLSQQMDDEDF
LEFVHDVQTNTIQEIAPFNPESSPLPPLPKLPPPSLKSFKRTGSLERPKESPPPPPTPIL
KCQPEIVEILPAKFDTFPRKQTANFVNENSATNVLVTEEEHREILLTENEIRNAMLYEYV
DDKNLQSKSELLNPNFSSNNPFLDTDTIASSTSTFSYQSSPNIMSPTSTLERSSESTYTP
IYSAPQVLPVHYGQLPKPQHTGYLVALPQQQYVIQQPQQQQQQPILVSGDGQNPFYVTNS
YSNNTIANNHHQTLLMQSAYMPAPSPLASYNRTIHTQQQQQSQFVYEHEQPQQTSFYSNF
NSNSVNMQQQQMNYSELSPIKVNQVQQHFVYAKDSDQQKSPQMTSFGKQTESPTPPSSVK
AETPKTVSDKKRFFEHVMEDQQKPTPKSDKSFSFLSEDEIEKLRQENEKKIATITRETKK
KIASAMATGVTASDDNINNNDQFNDNVNEDDEEFYSKNKNLIISQHVMNTEIDDDTNNRN
PLEALEAVFRS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 26 | g11970.t2 | CDD | cd00992 | PDZ_signaling | 685 | 768 | 1.32078E-24 |
| 28 | g11970.t2 | CDD | cd00992 | PDZ_signaling | 858 | 943 | 6.91042E-21 |
| 25 | g11970.t2 | CDD | cd00992 | PDZ_signaling | 1183 | 1270 | 4.0946E-23 |
| 27 | g11970.t2 | CDD | cd00992 | PDZ_signaling | 1280 | 1369 | 1.87408E-19 |
| 23 | g11970.t2 | Coils | Coil | Coil | 1439 | 1459 | - |
| 22 | g11970.t2 | Coils | Coil | Coil | 2260 | 2280 | - |
| 24 | g11970.t2 | Coils | Coil | Coil | 2342 | 2351 | - |
| 17 | g11970.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2 | 116 | 1.9E-23 |
| 16 | g11970.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 117 | 212 | 5.5E-27 |
| 15 | g11970.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 213 | 403 | 4.4E-44 |
| 21 | g11970.t2 | Gene3D | G3DSA:2.30.42.10 | - | 670 | 775 | 2.4E-29 |
| 19 | g11970.t2 | Gene3D | G3DSA:2.30.42.10 | - | 830 | 949 | 1.9E-26 |
| 20 | g11970.t2 | Gene3D | G3DSA:2.30.42.10 | - | 1176 | 1274 | 1.2E-28 |
| 18 | g11970.t2 | Gene3D | G3DSA:2.30.42.10 | - | 1275 | 1379 | 6.5E-28 |
| 64 | g11970.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 533 | - |
| 70 | g11970.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 485 | - |
| 66 | g11970.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 520 | - |
| 71 | g11970.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 604 | - |
| 62 | g11970.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1525 | 1550 | - |
| 67 | g11970.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1646 | 1693 | - |
| 72 | g11970.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1656 | 1681 | - |
| 63 | g11970.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1708 | 1723 | - |
| 69 | g11970.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1708 | 1848 | - |
| 68 | g11970.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1783 | 1811 | - |
| 61 | g11970.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2192 | 2228 | - |
| 65 | g11970.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2192 | 2223 | - |
| 7 | g11970.t2 | PANTHER | PTHR23119:SF44 | PROTEIN SCRIBBLE HOMOLOG | 1 | 1475 | 0.0 |
| 8 | g11970.t2 | PANTHER | PTHR23119 | DISCS LARGE | 1 | 1475 | 0.0 |
| 1 | g11970.t2 | Pfam | PF13855 | Leucine rich repeat | 37 | 95 | 2.2E-8 |
| 2 | g11970.t2 | Pfam | PF13855 | Leucine rich repeat | 198 | 256 | 1.9E-9 |
| 4 | g11970.t2 | Pfam | PF00595 | PDZ domain | 685 | 768 | 2.6E-16 |
| 6 | g11970.t2 | Pfam | PF00595 | PDZ domain | 861 | 943 | 2.7E-18 |
| 3 | g11970.t2 | Pfam | PF00595 | PDZ domain | 1184 | 1270 | 1.4E-19 |
| 5 | g11970.t2 | Pfam | PF00595 | PDZ domain | 1281 | 1368 | 9.1E-12 |
| 74 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 38 | 59 | 6.942 |
| 75 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 61 | 82 | 6.888 |
| 83 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 84 | 105 | 7.596 |
| 78 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 107 | 129 | 4.932 |
| 80 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 130 | 151 | 4.932 |
| 84 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 153 | 174 | 6.957 |
| 85 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 176 | 198 | 7.712 |
| 87 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 199 | 220 | 7.812 |
| 82 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 222 | 243 | 6.888 |
| 76 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 245 | 267 | 7.15 |
| 81 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 268 | 289 | 5.887 |
| 86 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 291 | 312 | 4.986 |
| 73 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 314 | 335 | 5.741 |
| 79 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 337 | 358 | 7.096 |
| 77 | g11970.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 360 | 382 | 6.326 |
| 91 | g11970.t2 | ProSiteProfiles | PS50106 | PDZ domain profile. | 685 | 772 | 22.355 |
| 88 | g11970.t2 | ProSiteProfiles | PS50106 | PDZ domain profile. | 856 | 946 | 22.114 |
| 89 | g11970.t2 | ProSiteProfiles | PS50106 | PDZ domain profile. | 1183 | 1273 | 21.431 |
| 90 | g11970.t2 | ProSiteProfiles | PS50106 | PDZ domain profile. | 1280 | 1372 | 18.315 |
| 40 | g11970.t2 | SMART | SM00364 | LRR_bac_2 | 36 | 55 | 85.0 |
| 41 | g11970.t2 | SMART | SM00369 | LRR_typ_2 | 37 | 58 | 92.0 |
| 48 | g11970.t2 | SMART | SM00369 | LRR_typ_2 | 59 | 81 | 2.2 |
| 60 | g11970.t2 | SMART | SM00365 | LRR_sd22_2 | 59 | 84 | 130.0 |
| 50 | g11970.t2 | SMART | SM00369 | LRR_typ_2 | 82 | 104 | 17.0 |
| 51 | g11970.t2 | SMART | SM00369 | LRR_typ_2 | 105 | 127 | 250.0 |
| 53 | g11970.t2 | SMART | SM00369 | LRR_typ_2 | 128 | 150 | 41.0 |
| 35 | g11970.t2 | SMART | SM00364 | LRR_bac_2 | 151 | 170 | 48.0 |
| 45 | g11970.t2 | SMART | SM00369 | LRR_typ_2 | 151 | 173 | 14.0 |
| 57 | g11970.t2 | SMART | SM00365 | LRR_sd22_2 | 151 | 173 | 94.0 |
| 34 | g11970.t2 | SMART | SM00364 | LRR_bac_2 | 174 | 193 | 230.0 |
| 43 | g11970.t2 | SMART | SM00369 | LRR_typ_2 | 174 | 196 | 0.26 |
| 56 | g11970.t2 | SMART | SM00365 | LRR_sd22_2 | 174 | 192 | 14.0 |
| 38 | g11970.t2 | SMART | SM00364 | LRR_bac_2 | 197 | 216 | 120.0 |
| 42 | g11970.t2 | SMART | SM00369 | LRR_typ_2 | 197 | 219 | 0.007 |
| 58 | g11970.t2 | SMART | SM00365 | LRR_sd22_2 | 197 | 225 | 300.0 |
| 36 | g11970.t2 | SMART | SM00364 | LRR_bac_2 | 220 | 239 | 25.0 |
| 47 | g11970.t2 | SMART | SM00369 | LRR_typ_2 | 220 | 242 | 6.7 |
| 46 | g11970.t2 | SMART | SM00369 | LRR_typ_2 | 243 | 265 | 1.7 |
| 59 | g11970.t2 | SMART | SM00365 | LRR_sd22_2 | 243 | 265 | 320.0 |
| 44 | g11970.t2 | SMART | SM00369 | LRR_typ_2 | 266 | 289 | 9.3 |
| 33 | g11970.t2 | SMART | SM00364 | LRR_bac_2 | 289 | 308 | 270.0 |
| 39 | g11970.t2 | SMART | SM00364 | LRR_bac_2 | 312 | 331 | 130.0 |
| 52 | g11970.t2 | SMART | SM00369 | LRR_typ_2 | 312 | 334 | 79.0 |
| 54 | g11970.t2 | SMART | SM00369 | LRR_typ_2 | 335 | 358 | 0.016 |
| 55 | g11970.t2 | SMART | SM00365 | LRR_sd22_2 | 335 | 357 | 110.0 |
| 37 | g11970.t2 | SMART | SM00364 | LRR_bac_2 | 358 | 377 | 210.0 |
| 49 | g11970.t2 | SMART | SM00369 | LRR_typ_2 | 359 | 381 | 120.0 |
| 31 | g11970.t2 | SMART | SM00228 | pdz_new | 693 | 772 | 1.2E-22 |
| 30 | g11970.t2 | SMART | SM00228 | pdz_new | 866 | 946 | 1.3E-21 |
| 32 | g11970.t2 | SMART | SM00228 | pdz_new | 1191 | 1273 | 1.3E-24 |
| 29 | g11970.t2 | SMART | SM00228 | pdz_new | 1289 | 1372 | 4.1E-17 |
| 9 | g11970.t2 | SUPERFAMILY | SSF52075 | Outer arm dynein light chain 1 | 10 | 121 | 2.62E-20 |
| 14 | g11970.t2 | SUPERFAMILY | SSF52058 | L domain-like | 94 | 393 | 2.38E-62 |
| 11 | g11970.t2 | SUPERFAMILY | SSF50156 | PDZ domain-like | 676 | 773 | 9.2E-26 |
| 10 | g11970.t2 | SUPERFAMILY | SSF50156 | PDZ domain-like | 834 | 952 | 7.62E-24 |
| 13 | g11970.t2 | SUPERFAMILY | SSF50156 | PDZ domain-like | 1176 | 1272 | 5.26E-26 |
| 12 | g11970.t2 | SUPERFAMILY | SSF50156 | PDZ domain-like | 1277 | 1373 | 7.36E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K16175 (protein scribble)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
