Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Microsomal glutathione S-transferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11976 g11976.t4 TTS g11976.t4 20128598 20128598
chr_1 g11976 g11976.t4 isoform g11976.t4 20128696 20129267
chr_1 g11976 g11976.t4 exon g11976.t4.exon1 20128696 20128809
chr_1 g11976 g11976.t4 cds g11976.t4.CDS1 20128696 20128809
chr_1 g11976 g11976.t4 exon g11976.t4.exon2 20128870 20129088
chr_1 g11976 g11976.t4 cds g11976.t4.CDS2 20128870 20129088
chr_1 g11976 g11976.t4 exon g11976.t4.exon3 20129139 20129267
chr_1 g11976 g11976.t4 cds g11976.t4.CDS3 20129139 20129267
chr_1 g11976 g11976.t4 TSS g11976.t4 20129346 20129346

Sequences

>g11976.t4 Gene=g11976 Length=462
ATGGATGTTTTGAATACTTTAAAATATGAGAACGATGTCTTACGAGGCTACATTACATGG
AGTGGTATTTTATTGATCAAGCTCCTTTTGATGGCTTTTTTGACTGGTTTTAATCGTTTT
CGTAAAGGAAAGGCTTATGAAAACCCAGAAGACATTCGTGGTCGTGAAAATGTTGAGATC
AAGAAAGATGAAGACGTTGAAAGAGTCAGACGTGCGCATTTAAATGATCTTGAGAATATT
CCCGCGTTCTTGTTTGCTGGTTTAGCTTATGTCTTCTCAAATCCAAACGTAGATTTAGCT
TTGTGGCTTTTCCGCATCGGTGTTCTCGCAAGAATTGGTCACACAATTGTTTATGCGATT
TATCCAGTTCGACAGCCTGCACGGTTCATTACTTTTATCATCACTTTGCTTATAACACTC
TTCATGATTATCGCATCAATCGCTGCATTCTTTCATCTTTAA

>g11976.t4 Gene=g11976 Length=153
MDVLNTLKYENDVLRGYITWSGILLIKLLLMAFLTGFNRFRKGKAYENPEDIRGRENVEI
KKDEDVERVRRAHLNDLENIPAFLFAGLAYVFSNPNVDLALWLFRIGVLARIGHTIVYAI
YPVRQPARFITFIITLLITLFMIIASIAAFFHL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g11976.t4 Gene3D G3DSA:1.20.120.550 - 4 152 2.8E-51
2 g11976.t4 PANTHER PTHR10689 MICROSOMAL GLUTATHIONE S-TRANSFERASE 1 6 150 2.2E-42
3 g11976.t4 PANTHER PTHR10689:SF6 IP20101P-RELATED 6 150 2.2E-42
1 g11976.t4 Pfam PF01124 MAPEG family 18 147 1.9E-26
12 g11976.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 16 -
15 g11976.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 17 37 -
9 g11976.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 38 76 -
14 g11976.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 77 93 -
11 g11976.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 94 98 -
17 g11976.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 99 121 -
10 g11976.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 122 127 -
16 g11976.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 128 151 -
13 g11976.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 152 153 -
7 g11976.t4 SUPERFAMILY SSF161084 MAPEG domain-like 11 144 1.7E-32
5 g11976.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 13 35 -
4 g11976.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 100 122 -
6 g11976.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 129 151 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values