Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Microsomal glutathione S-transferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11976 g11976.t6 TTS g11976.t6 20128598 20128598
chr_1 g11976 g11976.t6 isoform g11976.t6 20128696 20129267
chr_1 g11976 g11976.t6 exon g11976.t6.exon1 20128696 20128782
chr_1 g11976 g11976.t6 exon g11976.t6.exon2 20128842 20129085
chr_1 g11976 g11976.t6 cds g11976.t6.CDS1 20128858 20129085
chr_1 g11976 g11976.t6 exon g11976.t6.exon3 20129139 20129267
chr_1 g11976 g11976.t6 cds g11976.t6.CDS2 20129139 20129267
chr_1 g11976 g11976.t6 TSS g11976.t6 20129346 20129346

Sequences

>g11976.t6 Gene=g11976 Length=460
ATGGATGTTTTGAATACTTTAAAATATGAGAACGATGTCTTACGAGGCTACATTACATGG
AGTGGTATTTTATTGATCAAGCTCCTTTTGATGGCTTTTTTGACTGGTTTTAATCGTTTT
CGTAAAGGAGCTTATGAAAACCCAGAAGACATTCGTGGTCGTGAAAATGTTGAGATCAAG
AAAGATGAAGACGTTGAAAGAGTCAGACGTGCGCATTTAAATGATCTTGAGAATATTCCC
GCGTTCTTGTTTGCTGGTTTAGCTTATGTCTTCTCAAATCCAAACGTAGATTTAGCTTTG
TGGCTTTTCCGCATCGGTGTTCTCGCAAGAATTGGTCACACAATTGTGAGTAATTGATGA
TAAACATTTTGTGCCTGCACGGTTCATTACTTTTATCATCACTTTGCTTATAACACTCTT
CATGATTATCGCATCAATCGCTGCATTCTTTCATCTTTAA

>g11976.t6 Gene=g11976 Length=118
MDVLNTLKYENDVLRGYITWSGILLIKLLLMAFLTGFNRFRKGAYENPEDIRGRENVEIK
KDEDVERVRRAHLNDLENIPAFLFAGLAYVFSNPNVDLALWLFRIGVLARIGHTIVSN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g11976.t6 Gene3D G3DSA:1.20.120.550 - 4 117 3.9E-42
2 g11976.t6 PANTHER PTHR10689 MICROSOMAL GLUTATHIONE S-TRANSFERASE 1 6 116 9.9E-35
3 g11976.t6 PANTHER PTHR10689:SF6 IP20101P-RELATED 6 116 9.9E-35
1 g11976.t6 Pfam PF01124 MAPEG family 18 116 1.3E-18
10 g11976.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 16 -
13 g11976.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 17 37 -
9 g11976.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 38 75 -
14 g11976.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 76 92 -
11 g11976.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 93 97 -
12 g11976.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 98 116 -
8 g11976.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 117 118 -
6 g11976.t6 SUPERFAMILY SSF161084 MAPEG domain-like 11 116 1.01E-26
5 g11976.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 13 35 -
4 g11976.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 81 103 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed