General information for g11977.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11977 is located on chr_1: 20130478..20131124 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11977 | g11977.t2 | isoform | g11977.t2 | 20129344 | 20131124 |
| chr_1 | g11977 | g11977.t2 | exon | g11977.t2.exon1 | 20129344 | 20129989 |
| chr_1 | g11977 | g11977.t2 | cds | g11977.t2.CDS1 | 20129940 | 20129989 |
| chr_1 | g11977 | g11977.t2 | exon | g11977.t2.exon2 | 20130603 | 20130761 |
| chr_1 | g11977 | g11977.t2 | cds | g11977.t2.CDS2 | 20130603 | 20130761 |
| chr_1 | g11977 | g11977.t2 | exon | g11977.t2.exon3 | 20130867 | 20131124 |
| chr_1 | g11977 | g11977.t2 | cds | g11977.t2.CDS3 | 20130867 | 20130999 |
| chr_1 | g11977 | g11977.t2 | TSS | g11977.t2 | NA | NA |
| chr_1 | g11977 | g11977.t2 | TTS | g11977.t2 | NA | NA |
Sequences
>g11977.t2 Gene=g11977 Length=1063
ACTGAAAAATGAAAACAAAATACAAAATGAAATGGAATGAAAGAATTAATGATGATGATG
ATTGTAGTGGAAATGATAGTTGTGAGTAGACACACATGATGTGTTGCTTAAAATAGAACT
CAATGATTTATTGTAGTATTAGTTTGAGAGAATAAATAAATGAAAACTGAATTATTTTTT
CATTTGAAAAAATTTTAAACTCAAATTCTTAATGTGAAGAAAAGTTAAATTTCTTTATTT
ATATTATAGTTTAAAGATAATATTTTCAATTTTTGATATGTTTTTTTCCTCATTTTTACA
TTAAAGTTGATATATTAGTAACCTGAAAATGGTGAAATAAATGCGTTTCTAAAAAGCTAG
CAGCTTTATTGGACTTTTAAAAAAAAATTTACAATTTGATTTTTTTGCATTTTGCCATTT
TTTTGTTTTGTGTTCAACTTTGAGTTTTTGTAAGCCAGTAACCAAAGCGGCTAAATCTCT
GCGGTTTGTTGTTAAGGATCATTAATAGCTCCAAGATTTTGACTCACGTCAAAAAATAAT
ACAATTCTGGCTGATTTTTCGACTTTTATGTAAAACATGAAAATTTTTGTAAAATTATGA
TAGTCATATTGGATTTTCCTCAGTCAAATCTCGTGTTGTTTCAAAATGGCATAACGCGTT
CACGAAAAAATGCATTTGAAAATCCAGAAGATTTAGCAGTCAACAAAGCTGGTGAGATCA
AGAAAGATGAAGATGTTGAAAGAGTCAGACGCGCTCATATGAATGACTTAGAGAATATTC
CTGCCTTTCTTTTTGCTGCATTAATGCGTTGCTGTTCTAGCGAGAATTTTACATACAATT
TTTTATGCACTGTAAGCCATTATACAATCAACATTTGTTTATTTTCCCACCATTCCATGT
CCTCATTTTTTCTGCATTTTCAATTAATCATAAAGTAAAAACTTTCAATATATTTTCCAA
CAGTTATCCATTACAGCCTTTTAGATCGATAAGCTGGGCCATAACTTTAGCAATCACAAT
TTTTATGATTATCTGGGCGATAGTTATGCTTTTTCAAATTTAA
>g11977.t2 Gene=g11977 Length=113
MIVILDFPQSNLVLFQNGITRSRKNAFENPEDLAVNKAGEIKKDEDVERVRRAHMNDLEN
IPAFLFAALMRCCSSENFTYNFLCTVSHYTINICLFSHHSMSSFFLHFQLIIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g11977.t2 | Gene3D | G3DSA:1.20.120.550 | - | 7 | 107 | 0e+00 |
| 2 | g11977.t2 | PANTHER | PTHR10689 | MICROSOMAL GLUTATHIONE S-TRANSFERASE 1 | 13 | 92 | 0e+00 |
| 3 | g11977.t2 | PANTHER | PTHR10689:SF6 | IP20101P-RELATED | 13 | 92 | 0e+00 |
| 1 | g11977.t2 | Pfam | PF01124 | MAPEG family | 30 | 70 | 4e-07 |
| 4 | g11977.t2 | SUPERFAMILY | SSF161084 | MAPEG domain-like | 15 | 80 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
