Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11981 g11981.t17 isoform g11981.t17 20134711 20135414
chr_1 g11981 g11981.t17 exon g11981.t17.exon1 20134711 20135222
chr_1 g11981 g11981.t17 TTS g11981.t17 20134714 20134714
chr_1 g11981 g11981.t17 cds g11981.t17.CDS1 20134965 20135222
chr_1 g11981 g11981.t17 exon g11981.t17.exon2 20135286 20135414
chr_1 g11981 g11981.t17 cds g11981.t17.CDS2 20135286 20135414
chr_1 g11981 g11981.t17 TSS g11981.t17 20135467 20135467

Sequences

>g11981.t17 Gene=g11981 Length=641
ATGTCAATTTTAGAAATTTTAAGTCCTGAAAACGAAGTTTTTAGAGCATATGGTTTCTGG
GCTAGTGTCCTTGTTTTAAAAGTTTTAGGGATGGCTGTCTTAACAAGTATGGCAAGAAAA
AAGAAAAAGGCTATCAATAACCCTGAAGATCGTGTGTTTCTCAAGCCAGAAGATCAAAAT
GTTGAGCTTACTTCGTCTGATCCAGATGTAGAAAGAGTTAGAAGGTATTTTTCTTTAAAA
AAATTATTTCAGTTTCATTACTCAATCTTGCATCATTTCTTTGACAGAGCACATTTGAAT
GATTTAGAAAATTGTATTCCATTTCTGGTATTTTTTTTATCAATAATGCTATGTTTGGCT
ATCGTTATCAATTTTTATTTTTTTTAGATTATCTCATTCGTTTATGTTTTGACAAATCCT
TCAACATTCATTGGTGTAAATCTTATAAGAATCGGCGTGGTATCTCGTATTGTTCATTCT
TATAGTTATCTTAATGCTTTACAACCATACAGAGGCTACGGATTTGGCATAACTTTTTTG
GTAATGATTTATATGAGTCTTTCAAATATTTTATATTTCTTGTAAATAATTGCACCACTT
CTTTAATAAAATAAAGTATATCAGCATTGATTAAAAACAAA

>g11981.t17 Gene=g11981 Length=128
MSILEILSPENEVFRAYGFWASVLVLKVLGMAVLTSMARKKKKAINNPEDRVFLKPEDQN
VELTSSDPDVERVRRYFSLKKLFQFHYSILHHFFDRAHLNDLENCIPFLVFFLSIMLCLA
IVINFYFF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g11981.t17 Gene3D G3DSA:1.20.120.550 - 7 123 4.2E-20
2 g11981.t17 PANTHER PTHR10689 MICROSOMAL GLUTATHIONE S-TRANSFERASE 1 6 76 2.7E-17
3 g11981.t17 PANTHER PTHR10689:SF6 IP20101P-RELATED 6 76 2.7E-17
1 g11981.t17 Pfam PF01124 MAPEG family 18 115 9.4E-7
9 g11981.t17 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 16 -
12 g11981.t17 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 17 38 -
8 g11981.t17 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 39 105 -
11 g11981.t17 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 106 127 -
10 g11981.t17 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 128 128 -
6 g11981.t17 SUPERFAMILY SSF161084 MAPEG domain-like 11 76 1.14E-9
5 g11981.t17 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 15 37 -
4 g11981.t17 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 105 127 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values