Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Microsomal glutathione S-transferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11981 g11981.t21 TTS g11981.t21 20134714 20134714
chr_1 g11981 g11981.t21 isoform g11981.t21 20134767 20135414
chr_1 g11981 g11981.t21 exon g11981.t21.exon1 20134767 20134964
chr_1 g11981 g11981.t21 cds g11981.t21.CDS1 20134767 20134964
chr_1 g11981 g11981.t21 exon g11981.t21.exon2 20135025 20135064
chr_1 g11981 g11981.t21 cds g11981.t21.CDS2 20135025 20135064
chr_1 g11981 g11981.t21 exon g11981.t21.exon3 20135128 20135222
chr_1 g11981 g11981.t21 cds g11981.t21.CDS3 20135128 20135222
chr_1 g11981 g11981.t21 exon g11981.t21.exon4 20135292 20135414
chr_1 g11981 g11981.t21 cds g11981.t21.CDS4 20135292 20135414
chr_1 g11981 g11981.t21 TSS g11981.t21 20135467 20135467

Sequences

>g11981.t21 Gene=g11981 Length=456
ATGTCAATTTTAGAAATTTTAAGTCCTGAAAACGAAGTTTTTAGAGCATATGGTTTCTGG
GCTAGTGTCCTTGTTTTAAAAGTTTTAGGGATGGCTGTCTTAACAAGTATGGCAAGAAAA
AAGGCTATCAATAACCCTGAAGATCGTGTGTTTCTCAAGCCAGAAGATCAAAATGTTGAG
CTTACTTCGTCTGATCCAGATGTAGAAAGAGTTAGAAGAGCACATTTGAATGATTTAGAA
AATTGTATTCCATTTCTGATTATCTCATTCGTTTATGTTTTGACAAATCCTTCAACATTC
ATTGGTGTAAATCTTATAAGAATCGGCGTGGTATCTCGTATTGTTCATTCTTATAGTTAT
CTTAATGCTTTACAACCATACAGAGGCTACGGATTTGGCATAACTTTTTTGGTAATGATT
TATATGAGTCTTTCAAATATTTTATATTTCTTGTAA

>g11981.t21 Gene=g11981 Length=151
MSILEILSPENEVFRAYGFWASVLVLKVLGMAVLTSMARKKAINNPEDRVFLKPEDQNVE
LTSSDPDVERVRRAHLNDLENCIPFLIISFVYVLTNPSTFIGVNLIRIGVVSRIVHSYSY
LNALQPYRGYGFGITFLVMIYMSLSNILYFL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g11981.t21 Gene3D G3DSA:1.20.120.550 - 4 150 4.2E-44
2 g11981.t21 PANTHER PTHR10689 MICROSOMAL GLUTATHIONE S-TRANSFERASE 1 6 150 4.1E-37
3 g11981.t21 PANTHER PTHR10689:SF6 IP20101P-RELATED 6 150 4.1E-37
1 g11981.t21 Pfam PF01124 MAPEG family 18 147 2.4E-22
11 g11981.t21 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 16 -
13 g11981.t21 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 17 35 -
10 g11981.t21 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 36 81 -
15 g11981.t21 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 82 110 -
12 g11981.t21 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 111 129 -
14 g11981.t21 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 130 150 -
9 g11981.t21 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 151 151 -
7 g11981.t21 SUPERFAMILY SSF161084 MAPEG domain-like 11 142 2.35E-32
4 g11981.t21 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 13 35 -
6 g11981.t21 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 84 106 -
5 g11981.t21 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 127 149 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed