Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11981 g11981.t25 TTS g11981.t25 20134714 20134714
chr_1 g11981 g11981.t25 isoform g11981.t25 20134767 20135414
chr_1 g11981 g11981.t25 exon g11981.t25.exon1 20134767 20134964
chr_1 g11981 g11981.t25 cds g11981.t25.CDS1 20134767 20134964
chr_1 g11981 g11981.t25 exon g11981.t25.exon2 20135094 20135222
chr_1 g11981 g11981.t25 cds g11981.t25.CDS2 20135094 20135222
chr_1 g11981 g11981.t25 exon g11981.t25.exon3 20135286 20135414
chr_1 g11981 g11981.t25 cds g11981.t25.CDS3 20135286 20135414
chr_1 g11981 g11981.t25 TSS g11981.t25 20135467 20135467

Sequences

>g11981.t25 Gene=g11981 Length=456
ATGTCAATTTTAGAAATTTTAAGTCCTGAAAACGAAGTTTTTAGAGCATATGGTTTCTGG
GCTAGTGTCCTTGTTTTAAAAGTTTTAGGGATGGCTGTCTTAACAAGTATGGCAAGAAAA
AAGAAAAAGGCTATCAATAACCCTGAAGATCGTGTGTTTCTCAAGCCAGAAGATCAAAAT
GTTGAGCTTACTTCGTCTGATCCAGATGTAGAAAGAGTTAGAAGGTATTTTTCTTTAAAA
AAATTATTTCAGTTTCATATTATCTCATTCGTTTATGTTTTGACAAATCCTTCAACATTC
ATTGGTGTAAATCTTATAAGAATCGGCGTGGTATCTCGTATTGTTCATTCTTATAGTTAT
CTTAATGCTTTACAACCATACAGAGGCTACGGATTTGGCATAACTTTTTTGGTAATGATT
TATATGAGTCTTTCAAATATTTTATATTTCTTGTAA

>g11981.t25 Gene=g11981 Length=151
MSILEILSPENEVFRAYGFWASVLVLKVLGMAVLTSMARKKKKAINNPEDRVFLKPEDQN
VELTSSDPDVERVRRYFSLKKLFQFHIISFVYVLTNPSTFIGVNLIRIGVVSRIVHSYSY
LNALQPYRGYGFGITFLVMIYMSLSNILYFL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g11981.t25 Gene3D G3DSA:1.20.120.550 - 4 150 1.1E-35
2 g11981.t25 PANTHER PTHR10689 MICROSOMAL GLUTATHIONE S-TRANSFERASE 1 7 149 6.3E-29
1 g11981.t25 Pfam PF01124 MAPEG family 18 147 9.5E-13
10 g11981.t25 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 16 -
13 g11981.t25 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 17 38 -
8 g11981.t25 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 39 81 -
14 g11981.t25 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 82 110 -
11 g11981.t25 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 111 129 -
12 g11981.t25 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 130 150 -
9 g11981.t25 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 151 151 -
6 g11981.t25 SUPERFAMILY SSF161084 MAPEG domain-like 11 142 7.46E-25
5 g11981.t25 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 15 37 -
3 g11981.t25 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 89 111 -
4 g11981.t25 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 131 150 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed