Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Sodium/potassium-transporting ATPase subunit beta-2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11996 g11996.t11 TSS g11996.t11 20233096 20233096
chr_1 g11996 g11996.t11 isoform g11996.t11 20233202 20239785
chr_1 g11996 g11996.t11 exon g11996.t11.exon1 20233202 20233284
chr_1 g11996 g11996.t11 cds g11996.t11.CDS1 20233202 20233284
chr_1 g11996 g11996.t11 exon g11996.t11.exon2 20235508 20235638
chr_1 g11996 g11996.t11 cds g11996.t11.CDS2 20235508 20235638
chr_1 g11996 g11996.t11 exon g11996.t11.exon3 20237916 20238086
chr_1 g11996 g11996.t11 cds g11996.t11.CDS3 20237916 20238086
chr_1 g11996 g11996.t11 exon g11996.t11.exon4 20238155 20238244
chr_1 g11996 g11996.t11 cds g11996.t11.CDS4 20238155 20238244
chr_1 g11996 g11996.t11 exon g11996.t11.exon5 20238306 20238487
chr_1 g11996 g11996.t11 cds g11996.t11.CDS5 20238306 20238487
chr_1 g11996 g11996.t11 exon g11996.t11.exon6 20238550 20238661
chr_1 g11996 g11996.t11 cds g11996.t11.CDS6 20238550 20238661
chr_1 g11996 g11996.t11 exon g11996.t11.exon7 20238718 20238886
chr_1 g11996 g11996.t11 cds g11996.t11.CDS7 20238718 20238722
chr_1 g11996 g11996.t11 exon g11996.t11.exon8 20238949 20239785
chr_1 g11996 g11996.t11 TTS g11996.t11 20240584 20240584

Sequences

>g11996.t11 Gene=g11996 Length=1775
ATGACTCATGAAAGGAAACATGTTAAAGCAACGGAAAAAACTGAAATGTCTTATCTATTA
GACAAAAATGGGAAGAGTAACGGGATGGCCGATAAAAATAAACAGGGTGAATACTATTCG
AGACCAGCCAAAATGGGCAAATGGGAAGGCTTCAAACATTTTCTTTGGAATAGTGAAACT
AGTGAGCTGTTAGGACGAACAGGAGGAAGTTGGGCTAAAATTCTATTATTCTACGTACTC
TTCTATGCTGCCCTTGCCGGTTTTTTTGCTGCTATCTTTGCTGTATTTTATCAAACACTT
GATGCCAACAAACCGAAATGGCTTTTGGATAATGGTTTGATAGGCTCAAATCCCGGACTC
GGATTTCGTCCAATGCCTCCAGAGTCGAATGTAGAGAGCACACTCGTGTGGTTCGAAGCT
TCAAAAGAGTCTAACATTGAATATTGGATTTCTGCCCTTGATGAATTCTTGGAAGTTTAT
AAGAAAGAAGATCGAGAAGTCGAGAAGAATCGAATGGAATGTAATGCTCAAAATCATCCA
AAAGATGGAAAAGTTTGTCGTGTCGATGTATCACCGAATGCATTTGGCGCGTGTACAAAG
GAAAATCAGTATGGTTATGCGAAAGCCTCACCATGTATTTTCCTCAAGCTAAATAAGATT
TATGGATGGAATCCAGAATATTTTAATAGATCAAGTGAGCTGCCTTCAAAAATGCCAGAA
GATTTGCAAGAACAAATCAAGGGTATTCCAGAAGATGATAAAAATGTAACATGAAATGAT
TTGGGTCTCATGTGAGGGTGAAAATCCTGCTGATATTGAAAATTTGGGACCTATTAACTA
CATACCTAAACGTGGATTCCCAGGATATTATTTCCCATTCATGAATCAAAAAGGTTATTT
GCCACCAGTTTTGGCAATCAATTTTGAGCGTCCAAAAACTGGTGTACTCATTAATATTGA
ATGCAAAGCATGGGCACGCAACATTATGCACGACAGAGCTGAACGTCGAGGATCAGTTCA
TTTTGAATTGATGGTTGATTAAAGCGCTTAAAGATAGGGTTTCTAAATTCGTTAACAAAA
TGTAATAATTTTAAATCTTATTTTCAATAATTTATAAGAAAAGCATGAAACAAAATTAAA
ATTTATTATCATTTATTTTACATCTTAGAAATATGATATGTAGTACGATAGTTAGAAGTT
TAATTCTTCATCAAATGATGACATTTTTGCTCTTAATTAAACATTTAAATTAAGATTTTT
GCTACACGTAAAAGAAACCCATCTTGAAATTGATAAGAGAACATATAAGAAGAGGCAATG
AAGACAGTAGACGGTAGTTAGTTGGAAAGAGAAGATATAGTTTGATAACTGTGAGAGAAA
GTGGAATGTGGTCGTTGGCAATAATAAGAATGTTTTAGTAAAAAAAAAATAATGATTAAG
AACACACACGAATGTTTTAGTTTTAAAAAATGAGGAAGAAGATTATTAAAAATGCTAACT
AACAAAAATGAAAAACAAGTAAATTATTGAGTAATTTAGAATGAAGCAAATTGAATCCAT
TGCGCATTAATTAATTAAGTAAATGATAAGACAGACACTTATTAAATGTTAATCGATTAT
TAAATTATTTAAATGAGGAAAGCATGAAAAATGCAAAATTTGATGGCTAATTCCCACCAC
AACACATTATACACCATATAAACATATATTTTACCACTCTCCTATGAAAGTAATTATTAT
GATTATGTTTTTTTTATGTCTGATAAATAGGAAAA

>g11996.t11 Gene=g11996 Length=257
MTHERKHVKATEKTEMSYLLDKNGKSNGMADKNKQGEYYSRPAKMGKWEGFKHFLWNSET
SELLGRTGGSWAKILLFYVLFYAALAGFFAAIFAVFYQTLDANKPKWLLDNGLIGSNPGL
GFRPMPPESNVESTLVWFEASKESNIEYWISALDEFLEVYKKEDREVEKNRMECNAQNHP
KDGKVCRVDVSPNAFGACTKENQYGYAKASPCIFLKLNKIYGWNPEYFNRSSELPSKMPE
DLQEQIKGIPEDDKNVT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g11996.t11 Gene3D G3DSA:2.60.40.1660 Na 41 256 8.1E-66
6 g11996.t11 MobiDBLite mobidb-lite consensus disorder prediction 234 257 -
2 g11996.t11 PANTHER PTHR11523:SF46 SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA-2 36 253 4.1E-71
3 g11996.t11 PANTHER PTHR11523 SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT 36 253 4.1E-71
1 g11996.t11 Pfam PF00287 Sodium / potassium ATPase beta chain 45 237 8.9E-59
8 g11996.t11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 74 -
10 g11996.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 75 97 -
9 g11996.t11 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 98 257 -
5 g11996.t11 ProSitePatterns PS00390 Sodium and potassium ATPases beta subunits signature 1. 51 71 -
4 g11996.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 74 96 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006813 potassium ion transport BP
GO:0005890 sodium:potassium-exchanging ATPase complex CC
GO:0006814 sodium ion transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values