General information for g12011.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12011 is located on chr_1: 20338960..20347849 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12011 | g12011.t2 | TTS | g12011.t2 | 20338665 | 20338665 |
| chr_1 | g12011 | g12011.t2 | isoform | g12011.t2 | 20338960 | 20345054 |
| chr_1 | g12011 | g12011.t2 | exon | g12011.t2.exon1 | 20338960 | 20339339 |
| chr_1 | g12011 | g12011.t2 | exon | g12011.t2.exon2 | 20339858 | 20339921 |
| chr_1 | g12011 | g12011.t2 | exon | g12011.t2.exon3 | 20339989 | 20340057 |
| chr_1 | g12011 | g12011.t2 | exon | g12011.t2.exon4 | 20340385 | 20340609 |
| chr_1 | g12011 | g12011.t2 | exon | g12011.t2.exon5 | 20340980 | 20341288 |
| chr_1 | g12011 | g12011.t2 | exon | g12011.t2.exon6 | 20341413 | 20341615 |
| chr_1 | g12011 | g12011.t2 | exon | g12011.t2.exon7 | 20341668 | 20341989 |
| chr_1 | g12011 | g12011.t2 | cds | g12011.t2.CDS1 | 20341908 | 20341989 |
| chr_1 | g12011 | g12011.t2 | exon | g12011.t2.exon8 | 20342049 | 20342279 |
| chr_1 | g12011 | g12011.t2 | cds | g12011.t2.CDS2 | 20342049 | 20342279 |
| chr_1 | g12011 | g12011.t2 | exon | g12011.t2.exon9 | 20342425 | 20342969 |
| chr_1 | g12011 | g12011.t2 | cds | g12011.t2.CDS3 | 20342425 | 20342657 |
| chr_1 | g12011 | g12011.t2 | exon | g12011.t2.exon10 | 20344995 | 20345054 |
| chr_1 | g12011 | g12011.t2 | TSS | g12011.t2 | 20345152 | 20345152 |
Sequences
>g12011.t2 Gene=g12011 Length=2408
CGCGAAGTTGGATCATACGATCTATCGATATTAAATATTGATGGTGTCTACCCAAAAAAT
ACATATCGTGAGTTTGATCGTTCATACTCAAAGTCATCATTAAATCACAATCAAAACAAC
AATATTGATAGCTCGAAAAATGAACGCAGTGAATCGGGATTTGATTCAATCACTGATGGA
ATATTTAATAGTAACAATCAAGAATTCACACACATTCCATTAAATATTCCGTTGCCACCA
ACACGCGCTCCACCGCGACCGCCAGTTGAGAATGATTTCTCACCGCAACAATCGCCAATA
CCATGCCGCAAGCATCATCAACAACCGATACCTAATATCAATTTTATTGAATCATCGCCA
ACTCTCACACCCATGGGAAATTATGAAGATGATTTCAATATGAAAAGTATTCGTTTAATT
GAAAGCATCGATAATATCGAGGGAAGTGAAGTAGGAAGAAGAACTGAAAGTGAAATTAAA
ATTGATGAATTGAATGATAAGCTGACGTCAGATGTGAATGTTAGAAAGGAGGGCTTCATA
TCAGAAAAAATAAAACATGAAGAATTGGAGGAATTGGAAATTAAAGTTTATCCAAAGGAC
AGAATAACCGAAAAAATGATAACATCTGCCATAGTCTCAAATGACTTCTTATGCAACATT
TTGGATAACGAGTCGATAAAAACTGTCGTGAATGCTATGCGACTTGAATCGTATGATGAA
AATAGCTTCATTGTAACTGAGGGTGATTCGGGAAATTTTCTTTACGTATCCGCTGAGGGA
ATATTTGAGGTGATCAAAAATGGCAAACCTATTAAATCTTTTGGACCGGCAGTTGTTTTT
GGAGAGCTTTCAATTTTATATAAAGCAAAGCGTTTTGCGTCAATTAAAGGTATAAAAAAA
TTGTGCGTGACTGCATGATGAGCACACTAATTAATTTAATTTCCAATATCAGCCTTGACG
CTATGCAAGGTCTTCTCGCTCGAACGAAAAGTTTTTCAGAAAATTATGATGAGTTGTGGA
CGTCGTGAACGTGAGGAGAATATCAAATTCCTTCAATCCGTACCAGTACTAAAAGACTTG
CCATTGATGGTACTCAACAAGATATCTGATCTGCTGAAACGTGAATATTTTCCATCGGGC
TCTACGATCATAAGACAAGGCGATAGTGGCGAGAAATTTTATATCATAAAAAGTGGAAGC
GTGAATGTGATTAAGACCGATGATAATAATGGACAACGTCTTGTTGGCATCTTGAAGCGA
GGCGCATATTTTGGAGAGCAGGCACTGATACATCAAGATAAACGTCTAGCAAGCGTTATT
GCCAATTCACCCGGAACTGATTGCTTGACACTCGACCGAAATGCATTCGATGCTTATCTT
GGTGGTTTAGAGAAAATTCGCAATACAAAAGTTGTTGATAAAAACTTCCAACAAGTCCAA
AAAGTTTCTGCAAAGAGTGAATATGCTAATATTCAATTATCAGATCTAAAGTTTATTGGA
ACTCTTGGTGTTGGTGGATTTGGCAGAGTTGAACTGGTGCAATACAAAAATAAGACGACA
TTTGCTCTGAAATGTCTCAAGAAAATTGAAATGCTTCAGCAGCAGCAACAGGAACATGCA
TATAATGAGAAAGCAATTTTATTTGAATGCAACAGTCCGTTTATTGTTAGATTATATAAA
ACATTCAAGGATAAAAAGTATCTATATTATTTAATGGAGCCTTGTCTGGGTGGCGATGTT
TGGACGGTGTTACAAAAATATAAGTTTTTCGATGAGAAAATAGCAAAATTTATTACTGCG
TGTGTGGTATTGGCATTGGAATATCTTCACTCAAAGAACATCATTTATAGAGATTTGAAG
CCAGAAAATTTGCATGACTCAAATGGATATATAAAGTCGATTTTGGTTTTGCTAAAAGCT
TGCGACCTGGTTCTAAAACATTCACATTTGCAGGCACACCGGAATACGTTGCACCGGAAA
TTATACTAAATAAAGGCCACGATCAAAGTGTGGATTGTTGGAGTTTAGGTATTTTAATTC
ATGAGCTCCTTATTGGAAAACCACCATTTCGTGCAAAAGAGCAAATGCAAACATACAATC
TCATTTTACGTGGAATCGATTGTGTTCAGTTGCCTCAAAAAATTCCCAAAAAAGCACAAA
TGTTAATTAAAAGACTGTGTCGTCAAACGGGATCAGAACGAATTGGAGTACAGAAAAATG
GCATAAGAGATATAAAAGCACATCAATGGTTTACTGGCTTTCAATGGGATAAACTTGAGG
CGCGTAAAATGACAGCTCCATTGATTATGCCTGTGAAGAGCAACACAGATATGAGCAATT
TTGATGATTATCCGACAGACTATGATGAACCACCTGATGATTTGAGTGGATGGGATGATG
ATTTTTAA
>g12011.t2 Gene=g12011 Length=181
MGNYEDDFNMKSIRLIESIDNIEGSEVGRRTESEIKIDELNDKLTSDVNVRKEGFISEKI
KHEELEELEIKVYPKDRITEKMITSAIVSNDFLCNILDNESIKTVVNAMRLESYDENSFI
VTEGDSGNFLYVSAEGIFEVIKNGKPIKSFGPAVVFGELSILYKAKRFASIKGIKKLCVT
A
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g12011.t2 | CDD | cd00038 | CAP_ED | 93 | 172 | 0.0000000 |
| 5 | g12011.t2 | Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 64 | 181 | 0.0000000 |
| 2 | g12011.t2 | PANTHER | PTHR24353:SF58 | LP05330P | 31 | 175 | 0.0000000 |
| 3 | g12011.t2 | PANTHER | PTHR24353 | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE | 31 | 175 | 0.0000000 |
| 1 | g12011.t2 | Pfam | PF00027 | Cyclic nucleotide-binding domain | 112 | 172 | 0.0000004 |
| 6 | g12011.t2 | ProSiteProfiles | PS50042 | cAMP/cGMP binding motif profile. | 93 | 181 | 19.1190000 |
| 4 | g12011.t2 | SUPERFAMILY | SSF51206 | cAMP-binding domain-like | 39 | 174 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed