General information for g12014.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Importin subunit alpha-5.
Parent gene
- The parent gene g12014 is located on chr_1: 20393147..20394827 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12014 | g12014.t4 | TTS | g12014.t4 | 20392735 | 20392735 |
| chr_1 | g12014 | g12014.t4 | isoform | g12014.t4 | 20393147 | 20394827 |
| chr_1 | g12014 | g12014.t4 | exon | g12014.t4.exon1 | 20393147 | 20393847 |
| chr_1 | g12014 | g12014.t4 | cds | g12014.t4.CDS1 | 20393147 | 20393719 |
| chr_1 | g12014 | g12014.t4 | exon | g12014.t4.exon2 | 20393894 | 20394008 |
| chr_1 | g12014 | g12014.t4 | exon | g12014.t4.exon3 | 20394088 | 20394407 |
| chr_1 | g12014 | g12014.t4 | exon | g12014.t4.exon4 | 20394477 | 20394556 |
| chr_1 | g12014 | g12014.t4 | exon | g12014.t4.exon5 | 20394676 | 20394827 |
| chr_1 | g12014 | g12014.t4 | TSS | g12014.t4 | 20394835 | 20394835 |
Sequences
>g12014.t4 Gene=g12014 Length=1368
ATACCAACAAAACATCAACGTATTTTTTAAATTATCTCTCTGTAATTTTTATTAAATTAA
TTGTGTAATAAGTCAAATCTAAGTGTGCCTTGCCTTTTAAATAATAACTAAACCCACCTC
TTAACGTCTGATATTGAAGATTTGATCAATCGATATTTCAAAGATGTCTGAAAATACAGC
TCAACCATCAAGCCGATTGGCTGCATACAAGAATAATGCCAAAAATTCGGATGAAATGCG
ACAACGTCGTCAACAGATATCTGTTGAATTGCGTAAGAACAAGAAAGAAGATCAGCTGTT
AAAGCGTCGTAATATTGAACCAGCAGAACCTACTTCGCCACTTCAAGAATCCAATGCTCA
GTCACCATCTGCATCAGCTATTTCAGTTGATGATATTATGATGGCAATCAACAGTACCAA
TCCAACTTTGCAGTTTCAAGCTGTTCAAAGTGTTCGTAAAATGCTCAGCCGTGAGAAGAA
TCCACCAATTGATAAAATTATCAATATGGGTCTTGTGCCTATTTTAATTAATTTCCTTGA
CAATTTTGAAAATTTCTCAATCCAATTTGAAGCTGCATGGGCGCTTACAAATATTGCTTC
TGGTACTAGTGACCAAACAAAAGCAGTAATCAATCAAGGTGCAGTTCCTAAATTTATTGC
ATTACTGGAAATATTGCTGGTGATGGTTCTGACGCTCGTGATATTGTACTTAAAGATGGA
ACTGTTGAAAGTCTATTGGAACTACTGAATAATGAAAACATTGAAATTTCATTTCTTCGA
AATATTGTTTGGTTAATGTCTAATTTATGCCGTAATAAGAATCCAGCACCGCCATTCAGC
AAGATTAAAAAATTACTTCCGGCACTTTCAGAATTACTCAATCATGATGATAAACTTATT
CTTTCTGATGTATGTTGGGCACTTTCATATGTCACTGATGACACAACCGAAAAAGTGCAG
TCAGTTGTTAATTCAGGATGTGTTCCTCGTTTAATTGCACTTCTTGACACAGATGATGCA
ACAATTATTACACCTGCTTTGCGATCGATTGGAAATATTGTAACTGGTGATGATGTAACA
ACTGATGTTGTACTTAATGCAAAAGTTTTGCCCGCATTGGCTAATTTACTCACCAATAAA
AAACCTAACATTGTGAAAGAAGCTGCTTGGACATTAAGTAACATAACAGCTGGAACACCT
CATCAGATTCAAATGGTCTTGGATAGTGACATTTTCGCTCCACTCGTTAATGTTTTGAGT
CATGGAGATTTTAGAGCTCAACGTGAAGCAGCTTGGGCTGTTACTAATTTAACTAGCGGT
GGAACAAATGATCAAATAATTCAAATGGTTAACAAATATCCTCTTATG
>g12014.t4 Gene=g12014 Length=191
MSNLCRNKNPAPPFSKIKKLLPALSELLNHDDKLILSDVCWALSYVTDDTTEKVQSVVNS
GCVPRLIALLDTDDATIITPALRSIGNIVTGDDVTTDVVLNAKVLPALANLLTNKKPNIV
KEAAWTLSNITAGTPHQIQMVLDSDIFAPLVNVLSHGDFRAQREAAWAVTNLTSGGTNDQ
IIQMVNKYPLM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g12014.t4 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 189 | 0.0000000 |
| 5 | g12014.t4 | PANTHER | PTHR23316 | IMPORTIN ALPHA | 1 | 186 | 0.0000000 |
| 6 | g12014.t4 | PANTHER | PTHR23316:SF65 | IMPORTIN SUBUNIT ALPHA | 1 | 186 | 0.0000000 |
| 3 | g12014.t4 | Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 21 | 47 | 0.0002300 |
| 2 | g12014.t4 | Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 52 | 89 | 0.0000000 |
| 1 | g12014.t4 | Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 95 | 132 | 0.0000000 |
| 4 | g12014.t4 | Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 134 | 174 | 0.0000000 |
| 13 | g12014.t4 | ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 103 | 131 | 10.2020000 |
| 9 | g12014.t4 | SMART | SM00185 | arm_5 | 9 | 48 | 92.0000000 |
| 8 | g12014.t4 | SMART | SM00185 | arm_5 | 50 | 90 | 0.0008900 |
| 10 | g12014.t4 | SMART | SM00185 | arm_5 | 92 | 132 | 0.0000006 |
| 11 | g12014.t4 | SMART | SM00185 | arm_5 | 134 | 174 | 0.0000017 |
| 7 | g12014.t4 | SUPERFAMILY | SSF48371 | ARM repeat | 2 | 186 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
