Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12017 g12017.t3 TSS g12017.t3 20453431 20453431
chr_1 g12017 g12017.t3 isoform g12017.t3 20454275 20454855
chr_1 g12017 g12017.t3 exon g12017.t3.exon1 20454275 20454855
chr_1 g12017 g12017.t3 cds g12017.t3.CDS1 20454395 20454853
chr_1 g12017 g12017.t3 TTS g12017.t3 NA NA

Sequences

>g12017.t3 Gene=g12017 Length=581
ATTGATAGAGAGCAATCATTTAAAAATAGTAAATCTGATAATAATGAGCAACAAAATTTC
GTTGGATTCGCTTTTGCATCTGGAAAGCATATTGCTGTAGATGAAAAAGTTTTATCAAAT
ATGAAAAACAAATTTCAAATAGAAGACAACACTGATATCAATAATATTGAAATAGATGAA
ACTGAGACTAATCTAAATGAAAGTGAGATTAAAAAAGATGCAACTGAAATTATTCAAAAT
GAAAATGAGATTGAAATAGATGAAAATGATTTTAAAAACGTTGATCCTCAACCTATTGCA
ATCAATACTATTCAATCACAAAAAGAAGCCTATCAAAAATCTCTGTTTTCAAAATACGAA
GATGAGAATTATGATAAATCAAATGCGATACCATCGAACTCAAACAGAATGCCATCACAG
CCTCGTACTAATGATTTCAATCAAATTCCTGACTGTGCAACTCAAATAAAATATGAAGAA
ATTAATGATTTAATAACAAAAGTTGAGATAGCTGAAAGTATAAGAATCGCTCGAGTGGAA
GAGCTCAAAAAACAAATTGAATTTATATCAAAAAAGTCAAA

>g12017.t3 Gene=g12017 Length=153
MKNKFQIEDNTDINNIEIDETETNLNESEIKKDATEIIQNENEIEIDENDFKNVDPQPIA
INTIQSQKEAYQKSLFSKYEDENYDKSNAIPSNSNRMPSQPRTNDFNQIPDCATQIKYEE
INDLITKVEIAESIRIARVEELKKQIEFISKKS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g12017.t3 MobiDBLite mobidb-lite consensus disorder prediction 82 101 -
1 g12017.t3 MobiDBLite mobidb-lite consensus disorder prediction 86 101 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed