General information for g12038.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12038 is located on chr_1: 20588520..20589920 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12038 | g12038.t1 | TTS | g12038.t1 | 20588466 | 20588466 |
| chr_1 | g12038 | g12038.t1 | isoform | g12038.t1 | 20588520 | 20589920 |
| chr_1 | g12038 | g12038.t1 | exon | g12038.t1.exon1 | 20588520 | 20588735 |
| chr_1 | g12038 | g12038.t1 | cds | g12038.t1.CDS1 | 20588520 | 20588735 |
| chr_1 | g12038 | g12038.t1 | exon | g12038.t1.exon2 | 20588792 | 20588883 |
| chr_1 | g12038 | g12038.t1 | cds | g12038.t1.CDS2 | 20588792 | 20588883 |
| chr_1 | g12038 | g12038.t1 | exon | g12038.t1.exon3 | 20588941 | 20589055 |
| chr_1 | g12038 | g12038.t1 | cds | g12038.t1.CDS3 | 20588941 | 20589055 |
| chr_1 | g12038 | g12038.t1 | exon | g12038.t1.exon4 | 20589111 | 20589271 |
| chr_1 | g12038 | g12038.t1 | cds | g12038.t1.CDS4 | 20589111 | 20589271 |
| chr_1 | g12038 | g12038.t1 | exon | g12038.t1.exon5 | 20589326 | 20589730 |
| chr_1 | g12038 | g12038.t1 | cds | g12038.t1.CDS5 | 20589326 | 20589730 |
| chr_1 | g12038 | g12038.t1 | exon | g12038.t1.exon6 | 20589794 | 20589920 |
| chr_1 | g12038 | g12038.t1 | cds | g12038.t1.CDS6 | 20589794 | 20589920 |
| chr_1 | g12038 | g12038.t1 | TSS | g12038.t1 | NA | NA |
Sequences
>g12038.t1 Gene=g12038 Length=1116
ATGAATAGTCAAATTTTTATCGTTTTTCTGCTTTCTATCGTTTGTATGGCATCATGTCAT
CATACTGGACCATATATTTTATTCGGTTTTGAAAATTTTAATCAATTTAATATTTCAGCA
TTGCAAAGAATGGACAATTCAGAACTTCATAAAATTTATCAAAATGTTTCGAAAATTTTA
ATTTTTATCAAAAACAAAGAAATAAGATTGACATCAAAGGATTTTCCAAAATTATCTAAA
TGTATTGAAAATAATGAACATCTTTATTTGCCACAAGAGTTTTTACCTTCAGATCCATCA
CAATTTAATGAAAATGTTGAAATTATTAAACTTTCTGAATTTGAAAGTTTTCAAGACACT
CAAATTTTTGATTTTTTTTATGAAGCTCAAAATAAATATGGAAAAGGAAAAGTTCTTGGA
ATTTTGGCTAATAATTATCAAATTAAAAGACATAAAAGAGACTTGACAAATGAATTTGAA
ACAACAACAAAAGCACCAGAAAAAAGCGCAAAAATTCATTTTGATGTTAAAGACAATATT
CTCTTCTACACTTATAATACACCAAAGTTGATTTTTAAAAACGAAGGTGGAAATGTACAT
GTTTTGGAAAAATTTAAATCAGTAGAGGCGGCATATAATGAAGATAAATCAATTCAAACT
TTGACAGTTAATTATATAATTGATAACAAAGATTTTTCTCTCAAATTTCTTTTTGGTATT
AATTCTGGAATTTGGAAATTTGAGTATGTAGAACTTGATATGGGAAATACAAAGGAAGTT
TTAAAAATATATGAAAATATTCCGTCAGGTCCTATTGGAAAATATTCATATGGATGCAAT
AAAGTTTTGGTATTTAAAAATCAACAAAACACTATACATCTTCAATTACAAAATGTCCAA
ATTCAACGTTTTTTGAAACCTGATTCTGCAATGAGTTTTGGACCAGTTATCGATTGCATT
GGAATAGTATCACTTGGTACTTTTTATGGAGTTTTTATCAGTGGATTTTTGGTTTTTATA
CTTTCTATTGGAATTGGTGCTATCATGAACATTCGTTCATCTGATCGTATTGAAAATTCA
CATACAAATAATTTGTTTTATTATTTCGAAGAATAA
>g12038.t1 Gene=g12038 Length=371
MNSQIFIVFLLSIVCMASCHHTGPYILFGFENFNQFNISALQRMDNSELHKIYQNVSKIL
IFIKNKEIRLTSKDFPKLSKCIENNEHLYLPQEFLPSDPSQFNENVEIIKLSEFESFQDT
QIFDFFYEAQNKYGKGKVLGILANNYQIKRHKRDLTNEFETTTKAPEKSAKIHFDVKDNI
LFYTYNTPKLIFKNEGGNVHVLEKFKSVEAAYNEDKSIQTLTVNYIIDNKDFSLKFLFGI
NSGIWKFEYVELDMGNTKEVLKIYENIPSGPIGKYSYGCNKVLVFKNQQNTIHLQLQNVQ
IQRFLKPDSAMSFGPVIDCIGIVSLGTFYGVFISGFLVFILSIGIGAIMNIRSSDRIENS
HTNNLFYYFEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g12038.t1 | PANTHER | PTHR12471:SF4 | AGAP001624-PA | 7 | 364 | 3.6E-50 |
| 3 | g12038.t1 | PANTHER | PTHR12471 | VACUOLAR ATP SYNTHASE SUBUNIT S1 | 7 | 364 | 3.6E-50 |
| 1 | g12038.t1 | Pfam | PF05827 | Vacuolar ATP synthase subunit S1 (ATP6S1) | 233 | 364 | 7.1E-19 |
| 9 | g12038.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 10 | g12038.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 11 | g12038.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 15 | - |
| 13 | g12038.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 19 | - |
| 8 | g12038.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 327 | - |
| 12 | g12038.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 328 | 351 | - |
| 7 | g12038.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 352 | 371 | - |
| 6 | g12038.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
| 5 | g12038.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 27 | - |
| 4 | g12038.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 326 | 348 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:1902600 | proton transmembrane transport | BP |
| GO:0033180 | proton-transporting V-type ATPase, V1 domain | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed