General information for g12041.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as histone-arginine N-methyltransferase.
Parent gene
- The parent gene g12041 is located on chr_1: 20617147..20618700 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12041 | g12041.t1 | TSS | g12041.t1 | 20617122 | 20617122 |
| chr_1 | g12041 | g12041.t1 | isoform | g12041.t1 | 20617147 | 20618700 |
| chr_1 | g12041 | g12041.t1 | exon | g12041.t1.exon1 | 20617147 | 20617277 |
| chr_1 | g12041 | g12041.t1 | cds | g12041.t1.CDS1 | 20617147 | 20617277 |
| chr_1 | g12041 | g12041.t1 | exon | g12041.t1.exon2 | 20617337 | 20617430 |
| chr_1 | g12041 | g12041.t1 | cds | g12041.t1.CDS2 | 20617337 | 20617430 |
| chr_1 | g12041 | g12041.t1 | exon | g12041.t1.exon3 | 20617498 | 20618700 |
| chr_1 | g12041 | g12041.t1 | cds | g12041.t1.CDS3 | 20617498 | 20618700 |
| chr_1 | g12041 | g12041.t1 | TTS | g12041.t1 | 20618857 | 20618857 |
Sequences
>g12041.t1 Gene=g12041 Length=1428
ATGGAAATTATAGAAATAGATTCAGATGAAGAAAACAACGATTATAAAAGATATAATTTT
ATTTGTGGGACAATAAATAGAATAATAAAAGATTCGTTTGAACAACAGACTGTTTCTAAC
AACATTTTAAGCAAACCACTGTTAAGAACAAATTTTCCTGATGAAATATCAATTCGATCA
CCTTATATCTATTTAAAATCGAGTTATGTGCGTTCTTTAAAAACGCATGATGAAATAAGT
GATGAATTCGAGCTTGACCTTATTGTAAAAATGCTTCTGGAAGCAACAAACATTGTGATA
CCTCAAGACAAAAATGAGGAACTAAAATTGTATAAAATTTTTTGGGAAAATAATCAGCTA
AAAATGAAAGATAAATTCAAAAAATTTTCTAATTGGTATAATTCAATGAGAAAAGAATTG
ATGAATTGGCGGACTTGGATATTAATGGATATTAATTGCCCTAAACAGAATCAATGTTCA
AATGACTGCTACAAAGAAAAAGTCAATTTACGCTTCAACTTTATCTATACAGTTTCTGAC
GAGTACAGAATAAGAGATGCTATGATGATTTATGGTAGAGATTTTTGCAAAATAGCAGCT
AATTTGATGAAACCAATGACATGTAATCAAATATTTAAAATTGTTAGGCAAGGTAAAATC
ATGAATTTCTGCACTGATAAAAATTTGTTAATCGATCCCAGACCACAAAATCAAAGAATT
AAATTTCTTAAACAACGAAATGGAAAAGAGGAATTGCTTGTGACAACTATTTCATTTTAT
CAACCATGCATACATTATGGACAAATTTGTGATGCAATGTGTCCTTGTTATAATGGAAAA
AACTTTTGTGAGATATATTGCGGATGTGATTCACTATGCCTTAATAAATTCTCTGGATGT
GCTTGTTTGTCTCAATGCAATACTAAACTATGTTCATGCTTTCTTGCGTATAGAGAGTGT
GATCCTGAATTATGTAAAAAGCATGATGATGAGAAATGTGCCTGCAAAAATATGATGTTA
CAATCTGGCATTCATAAGGATTTAATAGTAAAGCAATCAAGTATTGATGGTATTGGACTT
GGAGCGTTTGCAGCTGAAACGATTGAATCAAAAGAATTTATCATTGAATATACTGGAGAA
CTTATAACAAACACTGAAGCAGATCGGAGAGCCGATTTTTATCACAATATAAAAAGTATT
TATATATTTGCACTTTGCAAGCAATATTCGATAGATGCTTATAAAATTGGAAATGAAAGT
AGATTTATTAATCATTCGGATACACCAAATTGCAGAGCAAAGATAATCAATATTAAAGGA
GATAAAAGAATTGCCATATATGCAAAACAAAAGATTAATGTAGATGAAGAGTTGTTTTTA
TCTTACAAGTTTAATGAAAAACATAAAGAATTATATTTCAAGAAGTAG
>g12041.t1 Gene=g12041 Length=475
MEIIEIDSDEENNDYKRYNFICGTINRIIKDSFEQQTVSNNILSKPLLRTNFPDEISIRS
PYIYLKSSYVRSLKTHDEISDEFELDLIVKMLLEATNIVIPQDKNEELKLYKIFWENNQL
KMKDKFKKFSNWYNSMRKELMNWRTWILMDINCPKQNQCSNDCYKEKVNLRFNFIYTVSD
EYRIRDAMMIYGRDFCKIAANLMKPMTCNQIFKIVRQGKIMNFCTDKNLLIDPRPQNQRI
KFLKQRNGKEELLVTTISFYQPCIHYGQICDAMCPCYNGKNFCEIYCGCDSLCLNKFSGC
ACLSQCNTKLCSCFLAYRECDPELCKKHDDEKCACKNMMLQSGIHKDLIVKQSSIDGIGL
GAFAAETIESKEFIIEYTGELITNTEADRRADFYHNIKSIYIFALCKQYSIDAYKIGNES
RFINHSDTPNCRAKIINIKGDKRIAIYAKQKINVDEELFLSYKFNEKHKELYFKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g12041.t1 | Gene3D | G3DSA:2.170.270.10 | SET domain | 260 | 465 | 0.0000000 |
| 3 | g12041.t1 | PANTHER | PTHR45747 | HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) | 143 | 466 | 0.0000000 |
| 4 | g12041.t1 | PANTHER | PTHR45747:SF4 | HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) | 143 | 466 | 0.0000000 |
| 1 | g12041.t1 | Pfam | PF18264 | CXC domain | 299 | 327 | 0.0000008 |
| 2 | g12041.t1 | Pfam | PF00856 | SET domain | 359 | 462 | 0.0000000 |
| 8 | g12041.t1 | ProSiteProfiles | PS51633 | CXC domain profile. | 237 | 345 | 15.0480000 |
| 9 | g12041.t1 | ProSiteProfiles | PS50280 | SET domain profile. | 346 | 463 | 15.1240000 |
| 6 | g12041.t1 | SMART | SM00317 | set_7 | 346 | 469 | 0.0000000 |
| 5 | g12041.t1 | SUPERFAMILY | SSF82199 | SET domain | 244 | 469 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed