General information for g1205.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Transcription initiation factor TFIID subunit 5.
Parent gene
- The parent gene g1205 is located on chr_3: 8736774..8737637 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1205 | g1205.t2 | TSS | g1205.t2 | 8734543 | 8734543 |
| chr_3 | g1205 | g1205.t2 | isoform | g1205.t2 | 8734641 | 8735520 |
| chr_3 | g1205 | g1205.t2 | exon | g1205.t2.exon1 | 8734641 | 8734700 |
| chr_3 | g1205 | g1205.t2 | cds | g1205.t2.CDS1 | 8734641 | 8734700 |
| chr_3 | g1205 | g1205.t2 | exon | g1205.t2.exon2 | 8734765 | 8734941 |
| chr_3 | g1205 | g1205.t2 | cds | g1205.t2.CDS2 | 8734765 | 8734941 |
| chr_3 | g1205 | g1205.t2 | exon | g1205.t2.exon3 | 8735000 | 8735520 |
| chr_3 | g1205 | g1205.t2 | cds | g1205.t2.CDS3 | 8735000 | 8735518 |
| chr_3 | g1205 | g1205.t2 | TTS | g1205.t2 | 8735517 | 8735517 |
Sequences
>g1205.t2 Gene=g1205 Length=758
ATGGCAAATAAAAATGACATCCTAGCAGTATTGCAGGTGTTGAAAAAGTACAATTTAAAG
GGAACTGAAAATCTCTTAAGACAAGAAGCTAATCTTACAGATATTCCTGAAAATTTCACA
CATGATGCATCTGACAGCGTTCTGCAAGCATATCAAAGTGAAGGCGATCCAAATTCCTAT
GAATCTTGCTATATTGAGTTGAGAAAATTTGTTGATTCGGCACTGGATATTTATAAATAT
GAACTCAGTATGATCCTTTATCCAGTTTTTGTGCATATGTATATTGAGCTCGTTTATAAT
AATCATGAAGAACAAGCGAAAGCATTGATGGAAAAATTTGGTGAAGAGCAGGAATATTAT
TATCAAGATGATTTAAAAAGACTCGCAATGATAACTAAAAGAGACCAAATGAGTGGCAAT
GATTTGACTGATACTTTTAAATCTAATGAATTTATTATAAGAATATCTCGCGACACCCTT
TCACTTCTAAAACGTCACTTACAAGAAAAGAAAGCAAGTGTTGTTATGAACATTATAAAT
GAGCATTTGTATTTTGATTTATATGAAGGAATGGCTAGAAATAAGAAGCAATGCGATGCA
ACTGCTGGTGCTTTGCTTGGTGAAGCAAGAAGACAAGACAACAAAGTTAAAGTATATTAT
GGATTATTGAAGGAACCAGATTATCAACAAATGACTACAACACAAGCACCACCGCCTGAA
GAGGATGACGATGAAGTTCAAGATGGTGATAAACCAAA
>g1205.t2 Gene=g1205 Length=252
MANKNDILAVLQVLKKYNLKGTENLLRQEANLTDIPENFTHDASDSVLQAYQSEGDPNSY
ESCYIELRKFVDSALDIYKYELSMILYPVFVHMYIELVYNNHEEQAKALMEKFGEEQEYY
YQDDLKRLAMITKRDQMSGNDLTDTFKSNEFIIRISRDTLSLLKRHLQEKKASVVMNIIN
EHLYFDLYEGMARNKKQCDATAGALLGEARRQDNKVKVYYGLLKEPDYQQMTTTQAPPPE
EDDDEVQDGDKP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g1205.t2 | CDD | cd08044 | TAF5_NTD2 | 57 | 189 | 4.34651E-53 |
| 6 | g1205.t2 | Gene3D | G3DSA:1.25.40.500 | - | 37 | 189 | 2.9E-52 |
| 5 | g1205.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 252 | - |
| 4 | g1205.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 252 | - |
| 2 | g1205.t2 | PANTHER | PTHR19879 | TRANSCRIPTION INITIATION FACTOR TFIID | 6 | 232 | 7.7E-38 |
| 1 | g1205.t2 | Pfam | PF04494 | WD40 associated region in TFIID subunit, NTD2 domain | 54 | 183 | 1.5E-43 |
| 3 | g1205.t2 | SUPERFAMILY | SSF160897 | Taf5 N-terminal domain-like | 44 | 188 | 6.54E-47 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed