General information for g1205.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transcription initiation factor TFIID subunit 5.
Parent gene
- The parent gene g1205 is located on chr_3: 8736774..8737637 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1205 | g1205.t5 | TSS | g1205.t5 | 8734543 | 8734543 |
| chr_3 | g1205 | g1205.t5 | isoform | g1205.t5 | 8735007 | 8735520 |
| chr_3 | g1205 | g1205.t5 | exon | g1205.t5.exon1 | 8735007 | 8735520 |
| chr_3 | g1205 | g1205.t5 | cds | g1205.t5.CDS1 | 8735012 | 8735518 |
| chr_3 | g1205 | g1205.t5 | TTS | g1205.t5 | 8735517 | 8735517 |
Sequences
>g1205.t5 Gene=g1205 Length=514
TCAGTATGATCCTTTATCCAGTTTTTGTGCATATGTATATTGAGCTCGTTTATAATAATC
ATGAAGAACAAGCGAAAGCATTGATGGAAAAATTTGGTGAAGAGCAGGAATATTATTATC
AAGATGATTTAAAAAGACTCGCAATGATAACTAAAAGAGACCAAATGAGTGGCAATGATT
TGACTGATACTTTTAAATCTAATGAATTTATTATAAGAATATCTCGCGACACCCTTTCAC
TTCTAAAACGTCACTTACAAGAAAAGAAAGCAAGTGTTGTTATGAACATTATAAATGAGC
ATTTGTATTTTGATTTATATGAAGGAATGGCTAGAAATAAGAAGCAATGCGATGCAACTG
CTGGTGCTTTGCTTGGTGAAGCAAGAAGACAAGACAACAAAGTTAAAGTATATTATGGAT
TATTGAAGGAACCAGATTATCAACAAATGACTACAACACAAGCACCACCGCCTGAAGAGG
ATGACGATGAAGTTCAAGATGGTGATAAACCAAA
>g1205.t5 Gene=g1205 Length=169
MILYPVFVHMYIELVYNNHEEQAKALMEKFGEEQEYYYQDDLKRLAMITKRDQMSGNDLT
DTFKSNEFIIRISRDTLSLLKRHLQEKKASVVMNIINEHLYFDLYEGMARNKKQCDATAG
ALLGEARRQDNKVKVYYGLLKEPDYQQMTTTQAPPPEEDDDEVQDGDKP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g1205.t5 | CDD | cd08044 | TAF5_NTD2 | 1 | 106 | 3.23352E-40 |
| 6 | g1205.t5 | Gene3D | G3DSA:1.25.40.500 | - | 1 | 106 | 4.1E-36 |
| 5 | g1205.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 169 | - |
| 4 | g1205.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 169 | - |
| 2 | g1205.t5 | PANTHER | PTHR19879 | TRANSCRIPTION INITIATION FACTOR TFIID | 2 | 149 | 1.9E-23 |
| 1 | g1205.t5 | Pfam | PF04494 | WD40 associated region in TFIID subunit, NTD2 domain | 2 | 100 | 2.8E-31 |
| 3 | g1205.t5 | SUPERFAMILY | SSF160897 | Taf5 N-terminal domain-like | 1 | 106 | 2.09E-33 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
## Warning: Removed 1 row(s) containing missing values (geom_path).
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed