General information for g12076.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative BRCA1-associated protein.
Parent gene
- The parent gene g12076 is located on chr_1: 20814940..20815926 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12076 | g12076.t6 | TSS | g12076.t6 | 20813989 | 20813989 |
| chr_1 | g12076 | g12076.t6 | isoform | g12076.t6 | 20814070 | 20815926 |
| chr_1 | g12076 | g12076.t6 | exon | g12076.t6.exon1 | 20814070 | 20814519 |
| chr_1 | g12076 | g12076.t6 | exon | g12076.t6.exon2 | 20814588 | 20814855 |
| chr_1 | g12076 | g12076.t6 | exon | g12076.t6.exon3 | 20814922 | 20815926 |
| chr_1 | g12076 | g12076.t6 | cds | g12076.t6.CDS1 | 20815402 | 20815926 |
| chr_1 | g12076 | g12076.t6 | TTS | g12076.t6 | 20816005 | 20816005 |
Sequences
>g12076.t6 Gene=g12076 Length=1723
ATGTCTATATTAGTTACACTGTGCTTACTAAAAATTGAAATAGTTGATGAAATGGAAAAT
GAAGGTGGTGAGTGAAAATCTTTCTTAAAATTAGTGAAAACATGAATATTCTTTGTTGTC
TGTAATAAATATTGTGTAATTTATTTTATTATAATTAGAATCAGCAGCAGCATCTTCGGT
TGATCAACGAGTCATAAAAGAACGTCGAGGACAGCGACAACCAAAAACTATTCAAATAGA
AACTTATGCAAATGTACTTGCAGGCGAACATCAACAAATTAAAGGTGTTTTACCAAAAAA
TTCAAATACAAACTCAAGGGAGCAAACGCCACTCACAGAAAATAATTCAGAAACGAGCTC
AGTCCCAGATACACCAAATGAAGTGAAATTTTTCTCTGGTAATCCATTTGTTGAACAAAC
TAATGGAATTTTGCATCTATACAAAAAGAATGAACGAGATTCAATACAAGATGGTCTCTC
TCAAACACTTTGTTTGCTTGCTGTTCCAGCAACATTGAGTTGCCATGATATTCTGAATTT
TATTGCACCTTGTCATTCAGTCATCAATCATGTTCGCATTATTCGAGATTCCAATCCAAA
TCAATATATGGTCATTTTAGATTTTCGTACTGTCGATGATGCTTACGAGTTTTATAAAAC
TTTCAATGGTGTTCCATACAATAGTCTTGAACCAGAACAACTTTGTCATACACTTTGGGT
AAGTGCTATTGCATGGGATAACATGGATTCAACTCCACCAAATCACACGGAATTGCCGGT
TTGTCCTGTTTGCCTCGATCGTATGGACGAAAGTGTTGATGGTGTGCTGACAATTTTATG
TAATCACACATTTCACTGTGGATGTTTAGTAAAATGGGGAGATAGTACTTGCCCTATTTG
TCGTTATGTACAGACACCAGAACTCACACAAAGTTCAGTATGCATGGAATGTGAAGGAAC
TGAAGCACTATAGATTTGTTTAATTTGTGGACATGTAGGATGTGGTCGCTATCAAGGTGG
ACATGCCGCAATACATTACAGAAATACAAACCATACATATGCTCTACAATTGGGAACTAA
TCGAGTATGGGATTATGCTGGCGATAATTTTGTTCATAGACTTTTGCAAAACAAATCAGA
TGGAAAACTTGTTGCAACTCAATCACCTAGTGGAGAAGGAGAGGAGAAAATTGATTCAAT
GCAATTAGAATTTACATATCTCTTAACTTCTCAACTTGATACTCAACGACAACATTATGA
AGAGAGACTTGCAAGAATTGAAGCTGCTATGGTTAATGATAAGCAAGGGATTCTCAAAGA
GACAGAAGCTATTAAAGAGAAAAATTCTGAATTTGAACAAAAATTAAATGCTGTAGTCAA
AGAAAAACAGGCAATTGAGAAGAAGTTGAATGCAATGAGTAGTCGTCTAGCGATAGTACT
AAAAGATCTCTCTGAAGAGAAACAATTTTCAAAAACTCTTCAATTAAATCACAATTCTTG
GCAGACAAAGTACTCAAATTTGGAAAAACTTTATAAAGAAAAAGAGCAAGAAGTTATTGA
TTTAAAGGAACAAGTGAGAGATTTAATGTTTTATATGGAAGCTCAAAATACAATTTCCAA
ATCTGAACTGAAAGATGAAATTGCAGAAGGTTCTGTAACAATAGGTGAAACAAGTGGAAA
TGGTAAAAACAAAAATCGACGCAAGAAGAAATCAAGCACATAA
>g12076.t6 Gene=g12076 Length=174
MQLEFTYLLTSQLDTQRQHYEERLARIEAAMVNDKQGILKETEAIKEKNSEFEQKLNAVV
KEKQAIEKKLNAMSSRLAIVLKDLSEEKQFSKTLQLNHNSWQTKYSNLEKLYKEKEQEVI
DLKEQVRDLMFYMEAQNTISKSELKDEIAEGSVTIGETSGNGKNKNRRKKKSST
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g12076.t6 | Coils | Coil | Coil | 10 | 30 | - |
| 6 | g12076.t6 | Coils | Coil | Coil | 49 | 76 | - |
| 5 | g12076.t6 | Coils | Coil | Coil | 98 | 125 | - |
| 3 | g12076.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 174 | - |
| 1 | g12076.t6 | PANTHER | PTHR24007 | BRCA1-ASSOCIATED PROTEIN | 2 | 171 | 9.7E-27 |
| 2 | g12076.t6 | PANTHER | PTHR24007:SF7 | BRCA1-ASSOCIATED PROTEIN | 2 | 171 | 9.7E-27 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
