General information for g12081.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12081 is located on chr_1: 20836411..20837991 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12081 | g12081.t4 | TTS | g12081.t4 | 20832589 | 20832589 |
| chr_1 | g12081 | g12081.t4 | isoform | g12081.t4 | 20833025 | 20834130 |
| chr_1 | g12081 | g12081.t4 | exon | g12081.t4.exon1 | 20833025 | 20833553 |
| chr_1 | g12081 | g12081.t4 | cds | g12081.t4.CDS1 | 20833025 | 20833553 |
| chr_1 | g12081 | g12081.t4 | exon | g12081.t4.exon2 | 20833617 | 20833931 |
| chr_1 | g12081 | g12081.t4 | cds | g12081.t4.CDS2 | 20833617 | 20833931 |
| chr_1 | g12081 | g12081.t4 | exon | g12081.t4.exon3 | 20834004 | 20834130 |
| chr_1 | g12081 | g12081.t4 | cds | g12081.t4.CDS3 | 20834004 | 20834119 |
| chr_1 | g12081 | g12081.t4 | TSS | g12081.t4 | NA | NA |
Sequences
>g12081.t4 Gene=g12081 Length=971
CCTACGATTGGATGCTATTTGGTCATGATTTACAAGACCGACTTCAGAAGGGCGAAGAGA
TTTTCTTTTTCTGCTTCTACGTGCTAAAATATTTGATGGATGACGAATTCAGTATTGCTG
GACAAAGATTTAGAAGCAGCAAACAAAGTAGCAGTGGAAGTAGTTCAATTGGTGTGATAC
GAACAGATAGCGATGTTTTCGATGGAATTCTTTTTGACGGTGATAGCAGAGGCTCGAGTA
ATTCTTTAAACTCAACATGTAGCGCAAGAAGTCAGCAAGATCATAATTTAACGACATCGT
CCAATGGCATGAGTATGCATTATGATGATAATAACGCTAATGGATGGGTGCAGAGTCAAG
AAGGAAATAGCTTTAATTGCTTAAATGCATCGACTGAAAACGCAACAAATATTCTAAATT
TTTCACCACAACTACAGAGGAGGACAAGTCCAATGTCAGTTCCAAAGATATCAAATCAAG
AGAACAAGAGTAATCGTCAACGCAATGAATCATCATCAAGTGTTTCTGTGGGTAGTTGGC
AACTCATAAGTGGAACAGGAAGTCTTAGATCGCAAGATTCAAATATAGTTGTAATTAATG
AATATCATCAGAATAATCAGTGCAATAATAACAATAACAGCTCATATTCAAATCATGCAC
AATCTTCCACAACTCAGTCTAATATGTGTTCAAACCAGCAAAATTTAAGCGGTAATGGCA
GTGGAAGCAATAGTGCGACAGTTAACAATTCAATACATGAATCTAGTACAATTGTTGATG
ATGATTGCTTTACTGCCAATGATTACTTTATGCGACGAGAGCGATTAAATTCAGTGCGAA
CGCTTTTTTATAATTGCTATAGTTCGACCATTGGATATAATTTTAGAAATGGTTCGAATG
ATGGGTCTTTTGGAACCCTTTTAGGTAATTTTGCAGAGAGAGTTGGTCTCACACAAAGAA
CAACAGTGTAA
>g12081.t4 Gene=g12081 Length=319
MLFGHDLQDRLQKGEEIFFFCFYVLKYLMDDEFSIAGQRFRSSKQSSSGSSSIGVIRTDS
DVFDGILFDGDSRGSSNSLNSTCSARSQQDHNLTTSSNGMSMHYDDNNANGWVQSQEGNS
FNCLNASTENATNILNFSPQLQRRTSPMSVPKISNQENKSNRQRNESSSSVSVGSWQLIS
GTGSLRSQDSNIVVINEYHQNNQCNNNNNSSYSNHAQSSTTQSNMCSNQQNLSGNGSGSN
SATVNNSIHESSTIVDDDCFTANDYFMRRERLNSVRTLFYNCYSSTIGYNFRNGSNDGSF
GTLLGNFAERVGLTQRTTV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g12081.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 173 | - |
| 1 | g12081.t4 | PANTHER | PTHR13524 | MYOTUBULARIN-RELATED | 1 | 314 | 3.3E-38 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004438 | phosphatidylinositol-3-phosphatase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
