Gene loci information

Transcript annotation

  • This transcript has been annotated as Dedicator of cytokinesis protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1210 g1210.t1 isoform g1210.t1 8770958 8785986
chr_3 g1210 g1210.t1 exon g1210.t1.exon1 8770958 8771325
chr_3 g1210 g1210.t1 cds g1210.t1.CDS1 8770958 8771325
chr_3 g1210 g1210.t1 exon g1210.t1.exon2 8771385 8771541
chr_3 g1210 g1210.t1 cds g1210.t1.CDS2 8771385 8771541
chr_3 g1210 g1210.t1 exon g1210.t1.exon3 8771599 8771799
chr_3 g1210 g1210.t1 cds g1210.t1.CDS3 8771599 8771799
chr_3 g1210 g1210.t1 exon g1210.t1.exon4 8771886 8771973
chr_3 g1210 g1210.t1 cds g1210.t1.CDS4 8771886 8771973
chr_3 g1210 g1210.t1 exon g1210.t1.exon5 8772382 8772462
chr_3 g1210 g1210.t1 cds g1210.t1.CDS5 8772382 8772462
chr_3 g1210 g1210.t1 exon g1210.t1.exon6 8772671 8773016
chr_3 g1210 g1210.t1 cds g1210.t1.CDS6 8772671 8773016
chr_3 g1210 g1210.t1 exon g1210.t1.exon7 8773097 8773244
chr_3 g1210 g1210.t1 cds g1210.t1.CDS7 8773097 8773244
chr_3 g1210 g1210.t1 exon g1210.t1.exon8 8773306 8775210
chr_3 g1210 g1210.t1 cds g1210.t1.CDS8 8773306 8775210
chr_3 g1210 g1210.t1 exon g1210.t1.exon9 8775566 8775679
chr_3 g1210 g1210.t1 cds g1210.t1.CDS9 8775566 8775679
chr_3 g1210 g1210.t1 exon g1210.t1.exon10 8777050 8777224
chr_3 g1210 g1210.t1 cds g1210.t1.CDS10 8777050 8777224
chr_3 g1210 g1210.t1 exon g1210.t1.exon11 8777296 8779226
chr_3 g1210 g1210.t1 cds g1210.t1.CDS11 8777296 8779226
chr_3 g1210 g1210.t1 exon g1210.t1.exon12 8779297 8779412
chr_3 g1210 g1210.t1 cds g1210.t1.CDS12 8779297 8779412
chr_3 g1210 g1210.t1 exon g1210.t1.exon13 8779550 8779703
chr_3 g1210 g1210.t1 cds g1210.t1.CDS13 8779550 8779703
chr_3 g1210 g1210.t1 exon g1210.t1.exon14 8779763 8779922
chr_3 g1210 g1210.t1 cds g1210.t1.CDS14 8779763 8779922
chr_3 g1210 g1210.t1 exon g1210.t1.exon15 8780173 8780284
chr_3 g1210 g1210.t1 cds g1210.t1.CDS15 8780173 8780284
chr_3 g1210 g1210.t1 exon g1210.t1.exon16 8785941 8785986
chr_3 g1210 g1210.t1 cds g1210.t1.CDS16 8785941 8785986
chr_3 g1210 g1210.t1 TSS g1210.t1 8786111 8786111
chr_3 g1210 g1210.t1 TTS g1210.t1 NA NA

Sequences

>g1210.t1 Gene=g1210 Length=6102
ATGGAGTCGTGGAAAAGTGTCGGAAAGCAATATTTGTTTGGAATAGCCAAACATAATTTT
CAACAAGACGATAAGCCGCACAGATTGTGTTTGGATGTCGGTGACAGTTTAATAATCATT
CGTGAAAGTGCGCATTGGTACTATGGATATAAAAAGAAAAATCGTTCATTGAAAGGCATT
TTTCCAAAAACTTATGTTCATCTTATTGCCGACGTTGAGATTGCTCGAGGTGAATACGTA
ATTAAACGTAGTGAAATTGTCGACGAAATAACAACAATTTTGAAGGAATGGCACGAGCAT
TTTAAGAAATTTTACTTGACAAATAATCCAAATTTAAAAGTGCTCCGTGAAAAGATGCTT
GAGTTAATTAAACTGCGTTCTCAAATGCTGTCGGGAAATCTGCCAGTGGATGAAATGAAA
GACAAAAAAATGAAAGCAACATCACAAATCGACACAGGAAATAAATTATTGGGTCTTGAT
ATGGTTGTTCGTGATGATAATGGAAACATATTGGACATTAATAATACTTCGACAACGGAA
CTTTATGAGCAACACGTTCAAGCAACAAGACGCATTCGACGTGCAACGACGGAAATCAAT
AAGAAACCTCCTGCTAAATCGATGAACAAATTTTCTCACAACCTGCTGATTACAGTTCAT
AATTTTGTATGCAAAATTAATGAAGACACAGAGCTGTTGTTTACGCTCTACGATGGTGAT
CGAATGAAAGCAATAACAGAAAATTATCTCATCAAATGGAACAGACAAGGTGGAGCCCAA
TATTTTAGTAATAATTTACGAGCTCTTTTTACTGATTTGAGTTCTGAGGATCTTCAACGT
AATAAAATATTCCTTGTCGCTTATGTCATTAGAATTGGTGCAATGGAATGTAAAGAATCA
GAATCGAGAAGAGTCAGTGTTACCAGTAATGTTTTGTCAAAGAGAGTTTCTACATCAAGT
CAAAATAATTCAACTGCAAATCTCAATGAAAGTTTAATGCGACGTCCTTTTGGAGTTGCT
GCAATCGATCTAACACCAATGATTAGAAAAGAAGAAGATTTTAAAAGTGACACTCAATTA
TCGATGCCATTCATCACATGCGAAAAAGAATCATTAGACATGACACTTAGAAAGTTATTT
AATAACAAAGATATTGGAAAAGATGGCTCAAATATTTGGATAAGTGTTGAGTTATTGCAT
GGTGACTTGAAACAAATAAAAGAGGAATATCCACATTTAATTGTTGGAAACATGGCACAT
GCTCGTAAAATGGGATTTCCTGAAGTTATTTATCCGGGCGACGTTCGAAACGATTTGTAC
GTGACACTTGTGAATGGTGAATTTTCAAGAAGCACGACTAGAACGGCTGACAAAAATATT
GAAGTGATTGTTTCGGTATGCAATGAGAATGGAGTGAGTGTAAAGGATGTTATAACACAA
GGTGGAGGTGCGACAATGGTCAGTGAATACCGTTCAGTAATTTATTATCATGACGACAAA
CCAAAATGGAATGAAACTTTCAAAATTAATGTGCCAATTGATGACTTTACAAAATGTCAT
CTTAAATTTCTTTTTAAACATCGAAGTTCAAATGATTCAAAGGATAAAAATGAAAAACCA
TTTGCAATTGCTTTCATAAAATTACAAAAGACAAATGGAACAATTTTACAACAAGGAAAT
CATACGCTAGTCGTTTATAAAATTGACCATAAAAAACTTGATGAGAGTACACAATTTAAT
TATTATTCATTACCTTCTGAAAATTTTGAGTTACTTGCAACACCAAAACCCTCGTTGGCT
CCTTATTCACTTTTACCAAAAGATACATTTGTCATTGATGTTAATTTATGCAGCACAAAG
CTTACACAAGATGTCGACTTACTTGGTTTACTGCAATGGAATAACAATACAAATAAAGAA
ACTCTGGAAATTTCTCTAAATCAACTTTTAAAACCAGTACCATCAGAAGAAATTGTAAAA
TTTCTACAAGACATACTCGATGCTCTCTTCAATATTCTAGTTCAAAATGATGAAATGCTT
TATGATGATCTTGTTTTTCAATGTTTAATTCGTCTCATTGAAATAGTGAGTGATAAAAAA
TATCAGCATTTTCAATCAGTTCTTGATCTTTATATAAATGAAAGTTTTTCATCAACACTT
GCTTATAAGAAGTTGATTAAAGTTCTTGAAAGTCATTTCTATGGTGCAATTGGTAGCATA
AAAAAGAGTCCTACATTACATGATGATAATGAAAATCCAGCAGAAAAGAAACTTTACAAA
ACAATCAAAAATTTGCAATACATTATGAAATTTATCATTCGATCGAGACTTTTGTATGCA
AAATTATATCAAGACCATGATCAATATTCATTTGAAACGAGTCTAGAAGAGTTGATGGCA
CTATTTGTCGATTTAATTCAGTTACCCAATTCACTTCTAACATCGCAAGGTGCCATTTTT
AAATATTTGCATGTGATTGCAAGCGATTTGATGGAAGTTTACGATCCACTGAAATTAAGC
AATTTTATTGTGGAAATTATTACAAAATTACCACCAGGACGTTTGACTCAATGTAAAATG
AAGTGCATTAAAGATCTTGTTGGGTCTAAAATCTTCCGTATGCCATTGTGCCGTGGAATT
TTATTGCCAGTCTTTTGTGCGCAAATAAAAGATAAATTAGAGTCTAAGGAAGAGGGTGAC
ATCATGTCTGATATTTGGCAACAAGAGAAAAATCTTACAAAAGCTGCGAAAATCTTGGGT
GAATCAAAATCGCAACTTCATGCACGCGAGTCAACGGCAAAAACTAAGGTCGCTGAATGT
GTGAATATTATGAACAATATATTGGAATTGTTATTTTCCAAAGATATTGGTGATACAGAT
AATGACATTCGTGATATCATGCTAATATTACTACGAACAGTAATTCAATCATCGATTGCA
ATGGATCGTGATAATCCATTAGTTGGAAATTTAGTTGCAATTATGCTAGCCATATTCAGA
AGCATGACAGAGAATCATTACAAAATGTATGTGAATCATTTTTATTCTCGTTTCGATTTA
CAAGAATTTCTTACGGAAATTTTCATGGTGTACAAAGAACTCATTTCAAAGCCTGTATTT
GCACCAGATTGGCTTGATATGATAATGCATCAAAATACAGTCATTCTTGAGAGTCTTCAT
CATTTTGCAAGAATCATCCGTGAACATTTCTCTGATCCATTTGAGAAGCAAGTATGGTCA
AATTTCTTTCACTGTTCAATTGCATTTTTGACACAACCAGCACTTCAATTGGATCAATTT
ACACGCAATAAAACTTCGATGATACTAGCAAGATATTGTGACATTCGACGAGAAGCGGCT
AAAGAAATTTGCAGTATGTGGTACAGCTTAGGACAGCACAAGCAATTTTTCGTGCCACAA
ATGGTTGGTCCATTTCTCGAAATGTCAATGATAAAAGAGACAGAATTAAGGAAAGAAACA
ATTCCGATATTTTTTGACATGATGCAATGTGAATATTTGTCATCGAAGCTCATAAATGAT
AGTTTTGGAGACACTAAGCGAAATATTTCACACATTCGTGGACATTTTCGCGAGTTTGAA
AGAGAGATGATTGAGAAGCTCGACATTTATGTAGAAGGGGGCCGTGGAGATGATGAATAT
AAAGATCTTTTTAATGAAATTATGACGAATTTATGTCGAAATCACATTGCTCTTCATCAA
GATGGAATTACTTTTGTTAATATGGCAACAAAATTGATGGAACGATTACTTGAATATCGT
TTTCTAATAAATGATGAAAGTAAAGAAAATAGAATGTCATGCACTGTGAGTCTTTTACAA
TTTTATGAAGTCAATAGAAAGGAAATGTATATCCGTTATGTCAATAAACTTCGAGAACTT
CATATGGAATTTGATAACTACGCAGAAGCTGCATTTACACTGAAACTTCATAGCAATCTC
TTGCAATGGAATGATACACAATTGCCTCCGTTGCTAAAGTCCAGTAAACATGCACATTGC
ACCACACATAGATCATTGAAAGAAACACTCTATAATGAAATCATCGAATATTTTGATCAG
GGAAATATGTGGGAGAGTGCATTGGAAGTTTGCAAAGAACTTGTTAAACAATATGAATTT
GAAACATATGATTATGAAAGTTTGAGTGCATTGCACATTAAAATGTCAGATTTTTATAAA
AACATTGTTTCGGAAATGCGACACGATGTTGAGTACTTTAGAGTAACATTTTATGGATTT
GGTTTTCCTGAATTATTGCGGAATAAAACTTTTATTTATCGTGGAAAAGAATATGAACAA
TTGCAATCATTTTGTTCAAGAATTCTAAGTCAACATCCAAAAGCTGAAATTATGCAAACA
TTGGAAAAACCAGGAGAAGATATAACAAAAAGTGATGGACAATATATTCAAATTAATAAA
GTTGAGCCAATTATGAGCGAGAAACATCAAAAGTTGTATGAATCGGCACAGTCAAAGAGA
ATAGCAAAATCTATCGTAAAATATTACAAAACAAATGACGTCGATCATTTCAAATTTTCA
CGACCATTCCGTGACACATCGAAAAATTGGATGTCATCAAGTGAATCTGATAATGTTGGA
AATTTATGGCTTGAAAGAACAGTGATGAAAACTTTATATCCATTACCAGGCATTTTAAAA
TGGTTCCCTGTTGAAACATCAGAAACATTTAATGTTTCACCTATCGAATGTGCTATTGAA
ATGATGGAAGCAAACAATAAAATGCTTCGTGATTTAGTGATTGAACATCAAAATGACAGC
ACTGCAGCGTTAGCTCAGTTAACGATGAAAATTCAAGGTGTTGTTGATGCGGCTGTTAAT
GGTGGAACGAGTAAATATGAGGAAGCTTTCTTAACTGACGATTACTTGAAAATGAATCCA
AGCGATGTAAAATTTGTGGAAACGTTGAAAAACCTAATTGCTGATCAAATCCCAATTTTG
GAAGTTGCGCTATCTGTACATAAAGCTAAAGCAAAACCAGAAATTTTACCACTTCATGAA
CGCTTAGAAGAATGCTTCACAAAAATGCAAGTACATGTTGAATCAATGTACGGAAAACGA
ACAACTGATTTAAAATTTGAGAAAGATAATTCTGTCGTGTTGCGAAAAGATGTTTTAAAA
ACACCACATGACAATCGTTTAAGTGAAACAAGCATGGGTTCTTCTGATAGCGGAATTTCA
AATCGTCGACAAATCACAACTGCAATTAATAAAGTTTTCAACTTCAACTCACCACCATCG
TTCACTAGTGTGAGACAAACAATGGTGACATCTTCTCCACTAAATAAAAAATCTAAAGAC
AAGATGTCAACACAAAAAAGGCGCAACAGTAAAAAGATGGACAGAGAAATCTTGAGTTTG
CCAAATAGTCAATTTTATACAGCTGCAGTCTCGTCACTTACAATGAAATTAAGTACCATC
GCACAAACGCCGACAGAAAAAGAGGAGAAAGAAAATTTTGGTGTATTGTCAGCAGCAACT
TCTTCAACTACAATCGTTTCTAATCCAACTACACCAGTTTTTGAATTAACTGAAGAGCTT
ACACCAAAAAGACCATTGAGATCAGAAATTGAGAAAGAAAAACGTTTATCACGAACACAA
AGTGTAATTGTCGCAAATAATTCAAATGGAGTAACAAATAAAGTTGACAATGCATCAGTC
TCGGGTGAAAGTAGTAATAGCAGAAATTCGATAATTACAACAGATTCGCAAACAAGCGAA
GAAGACAGTCTTGTTCCACCGCCACTTCCCTTAAAGCATCGCGATTCTGATTTTGGAAAT
TTATCGTTAGAAGATACTCTTTATTCAAGAGCACCATCAAATCGAGCATCCACCGGTTCT
GATCGTTATCATATTTTCAATCGTCCTTTGCCTGCTGCACCCACTCATGGTAGTGACGAT
TTCATTGCAAGCAATAGTCATTATGAAGTGTTGGAAATCAGAAATCGTGAAGTAATTGAA
GCAACGGAAGCAAAAATCATCGGAAAGAAATTAGCACCACAGCCGCCTCCTAAACCCGTG
CGAAATAATTCTAAAACAAGCAACATGCCGATGTCACCATAA

>g1210.t1 Gene=g1210 Length=2033
MESWKSVGKQYLFGIAKHNFQQDDKPHRLCLDVGDSLIIIRESAHWYYGYKKKNRSLKGI
FPKTYVHLIADVEIARGEYVIKRSEIVDEITTILKEWHEHFKKFYLTNNPNLKVLREKML
ELIKLRSQMLSGNLPVDEMKDKKMKATSQIDTGNKLLGLDMVVRDDNGNILDINNTSTTE
LYEQHVQATRRIRRATTEINKKPPAKSMNKFSHNLLITVHNFVCKINEDTELLFTLYDGD
RMKAITENYLIKWNRQGGAQYFSNNLRALFTDLSSEDLQRNKIFLVAYVIRIGAMECKES
ESRRVSVTSNVLSKRVSTSSQNNSTANLNESLMRRPFGVAAIDLTPMIRKEEDFKSDTQL
SMPFITCEKESLDMTLRKLFNNKDIGKDGSNIWISVELLHGDLKQIKEEYPHLIVGNMAH
ARKMGFPEVIYPGDVRNDLYVTLVNGEFSRSTTRTADKNIEVIVSVCNENGVSVKDVITQ
GGGATMVSEYRSVIYYHDDKPKWNETFKINVPIDDFTKCHLKFLFKHRSSNDSKDKNEKP
FAIAFIKLQKTNGTILQQGNHTLVVYKIDHKKLDESTQFNYYSLPSENFELLATPKPSLA
PYSLLPKDTFVIDVNLCSTKLTQDVDLLGLLQWNNNTNKETLEISLNQLLKPVPSEEIVK
FLQDILDALFNILVQNDEMLYDDLVFQCLIRLIEIVSDKKYQHFQSVLDLYINESFSSTL
AYKKLIKVLESHFYGAIGSIKKSPTLHDDNENPAEKKLYKTIKNLQYIMKFIIRSRLLYA
KLYQDHDQYSFETSLEELMALFVDLIQLPNSLLTSQGAIFKYLHVIASDLMEVYDPLKLS
NFIVEIITKLPPGRLTQCKMKCIKDLVGSKIFRMPLCRGILLPVFCAQIKDKLESKEEGD
IMSDIWQQEKNLTKAAKILGESKSQLHARESTAKTKVAECVNIMNNILELLFSKDIGDTD
NDIRDIMLILLRTVIQSSIAMDRDNPLVGNLVAIMLAIFRSMTENHYKMYVNHFYSRFDL
QEFLTEIFMVYKELISKPVFAPDWLDMIMHQNTVILESLHHFARIIREHFSDPFEKQVWS
NFFHCSIAFLTQPALQLDQFTRNKTSMILARYCDIRREAAKEICSMWYSLGQHKQFFVPQ
MVGPFLEMSMIKETELRKETIPIFFDMMQCEYLSSKLINDSFGDTKRNISHIRGHFREFE
REMIEKLDIYVEGGRGDDEYKDLFNEIMTNLCRNHIALHQDGITFVNMATKLMERLLEYR
FLINDESKENRMSCTVSLLQFYEVNRKEMYIRYVNKLRELHMEFDNYAEAAFTLKLHSNL
LQWNDTQLPPLLKSSKHAHCTTHRSLKETLYNEIIEYFDQGNMWESALEVCKELVKQYEF
ETYDYESLSALHIKMSDFYKNIVSEMRHDVEYFRVTFYGFGFPELLRNKTFIYRGKEYEQ
LQSFCSRILSQHPKAEIMQTLEKPGEDITKSDGQYIQINKVEPIMSEKHQKLYESAQSKR
IAKSIVKYYKTNDVDHFKFSRPFRDTSKNWMSSSESDNVGNLWLERTVMKTLYPLPGILK
WFPVETSETFNVSPIECAIEMMEANNKMLRDLVIEHQNDSTAALAQLTMKIQGVVDAAVN
GGTSKYEEAFLTDDYLKMNPSDVKFVETLKNLIADQIPILEVALSVHKAKAKPEILPLHE
RLEECFTKMQVHVESMYGKRTTDLKFEKDNSVVLRKDVLKTPHDNRLSETSMGSSDSGIS
NRRQITTAINKVFNFNSPPSFTSVRQTMVTSSPLNKKSKDKMSTQKRRNSKKMDREILSL
PNSQFYTAAVSSLTMKLSTIAQTPTEKEEKENFGVLSAATSSTTIVSNPTTPVFELTEEL
TPKRPLRSEIEKEKRLSRTQSVIVANNSNGVTNKVDNASVSGESSNSRNSIITTDSQTSE
EDSLVPPPLPLKHRDSDFGNLSLEDTLYSRAPSNRASTGSDRYHIFNRPLPAAPTHGSDD
FIASNSHYEVLEIRNREVIEATEAKIIGKKLAPQPPPKPVRNNSKTSNMPMSP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g1210.t1 CDD cd11872 SH3_DOCK_AB 13 68 1.83231E-23
11 g1210.t1 Coils Coil Coil 1579 1599 -
7 g1210.t1 Gene3D G3DSA:2.30.30.40 SH3 Domains 2 70 1.8E-11
8 g1210.t1 Gene3D G3DSA:1.20.1270.350 - 80 175 3.4E-29
9 g1210.t1 Gene3D G3DSA:2.60.40.150 - 436 627 8.0E-70
10 g1210.t1 Gene3D G3DSA:1.25.40.410 - 1260 1407 2.5E-59
6 g1210.t1 Gene3D G3DSA:1.20.58.740 - 1573 1702 5.0E-43
15 g1210.t1 MobiDBLite mobidb-lite consensus disorder prediction 1768 1793 -
16 g1210.t1 MobiDBLite mobidb-lite consensus disorder prediction 1888 1935 -
17 g1210.t1 MobiDBLite mobidb-lite consensus disorder prediction 1888 1923 -
14 g1210.t1 MobiDBLite mobidb-lite consensus disorder prediction 2008 2033 -
4 g1210.t1 PANTHER PTHR45653 DEDICATOR OF CYTOKINESIS 11 1760 0.0
2 g1210.t1 Pfam PF16172 DOCK N-terminus 79 427 1.1E-90
3 g1210.t1 Pfam PF14429 C2 domain in Dock180 and Zizimin proteins 432 625 1.6E-55
1 g1210.t1 Pfam PF06920 Dock homology region 2 1194 1694 4.3E-90
18 g1210.t1 ProSiteProfiles PS50002 Src homology 3 (SH3) domain profile. 9 71 14.085
20 g1210.t1 ProSiteProfiles PS51650 DHR-1 domain profile. 436 617 51.467
19 g1210.t1 ProSiteProfiles PS51651 DHR-2 domain profile. 1281 1702 82.912
13 g1210.t1 SMART SM00326 SH3_2 12 70 2.6E-6
5 g1210.t1 SUPERFAMILY SSF50044 SH3-domain 11 72 8.03E-7

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0007264 small GTPase mediated signal transduction BP
GO:0005085 guanyl-nucleotide exchange factor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values