Gene loci information

Transcript annotation

  • This transcript has been annotated as Dedicator of cytokinesis protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1210 g1210.t2 isoform g1210.t2 8770958 8785986
chr_3 g1210 g1210.t2 exon g1210.t2.exon1 8770958 8771325
chr_3 g1210 g1210.t2 cds g1210.t2.CDS1 8770958 8771325
chr_3 g1210 g1210.t2 exon g1210.t2.exon2 8771385 8771541
chr_3 g1210 g1210.t2 cds g1210.t2.CDS2 8771385 8771541
chr_3 g1210 g1210.t2 exon g1210.t2.exon3 8771599 8771799
chr_3 g1210 g1210.t2 cds g1210.t2.CDS3 8771599 8771799
chr_3 g1210 g1210.t2 exon g1210.t2.exon4 8771886 8771973
chr_3 g1210 g1210.t2 cds g1210.t2.CDS4 8771886 8771973
chr_3 g1210 g1210.t2 exon g1210.t2.exon5 8772382 8772462
chr_3 g1210 g1210.t2 cds g1210.t2.CDS5 8772382 8772462
chr_3 g1210 g1210.t2 exon g1210.t2.exon6 8772671 8773016
chr_3 g1210 g1210.t2 cds g1210.t2.CDS6 8772671 8773016
chr_3 g1210 g1210.t2 exon g1210.t2.exon7 8773097 8773244
chr_3 g1210 g1210.t2 cds g1210.t2.CDS7 8773097 8773244
chr_3 g1210 g1210.t2 exon g1210.t2.exon8 8773306 8775210
chr_3 g1210 g1210.t2 cds g1210.t2.CDS8 8773306 8775210
chr_3 g1210 g1210.t2 exon g1210.t2.exon9 8777050 8777224
chr_3 g1210 g1210.t2 cds g1210.t2.CDS9 8777050 8777224
chr_3 g1210 g1210.t2 exon g1210.t2.exon10 8777296 8779226
chr_3 g1210 g1210.t2 cds g1210.t2.CDS10 8777296 8779226
chr_3 g1210 g1210.t2 exon g1210.t2.exon11 8779297 8779412
chr_3 g1210 g1210.t2 cds g1210.t2.CDS11 8779297 8779412
chr_3 g1210 g1210.t2 exon g1210.t2.exon12 8779550 8779703
chr_3 g1210 g1210.t2 cds g1210.t2.CDS12 8779550 8779703
chr_3 g1210 g1210.t2 exon g1210.t2.exon13 8779763 8779922
chr_3 g1210 g1210.t2 cds g1210.t2.CDS13 8779763 8779922
chr_3 g1210 g1210.t2 exon g1210.t2.exon14 8780173 8780284
chr_3 g1210 g1210.t2 cds g1210.t2.CDS14 8780173 8780284
chr_3 g1210 g1210.t2 exon g1210.t2.exon15 8785941 8785986
chr_3 g1210 g1210.t2 cds g1210.t2.CDS15 8785941 8785986
chr_3 g1210 g1210.t2 TSS g1210.t2 8786111 8786111
chr_3 g1210 g1210.t2 TTS g1210.t2 NA NA

Sequences

>g1210.t2 Gene=g1210 Length=5988
ATGGAGTCGTGGAAAAGTGTCGGAAAGCAATATTTGTTTGGAATAGCCAAACATAATTTT
CAACAAGACGATAAGCCGCACAGATTGTGTTTGGATGTCGGTGACAGTTTAATAATCATT
CGTGAAAGTGCGCATTGGTACTATGGATATAAAAAGAAAAATCGTTCATTGAAAGGCATT
TTTCCAAAAACTTATGTTCATCTTATTGCCGACGTTGAGATTGCTCGAGGTGAATACGTA
ATTAAACGTAGTGAAATTGTCGACGAAATAACAACAATTTTGAAGGAATGGCACGAGCAT
TTTAAGAAATTTTACTTGACAAATAATCCAAATTTAAAAGTGCTCCGTGAAAAGATGCTT
GAGTTAATTAAACTGCGTTCTCAAATGCTGTCGGGAAATCTGCCAGTGGATGAAATGAAA
GACAAAAAAATGAAAGCAACATCACAAATCGACACAGGAAATAAATTATTGGGTCTTGAT
ATGGTTGTTCGTGATGATAATGGAAACATATTGGACATTAATAATACTTCGACAACGGAA
CTTTATGAGCAACACGTTCAAGCAACAAGACGCATTCGACGTGCAACGACGGAAATCAAT
AAGAAACCTCCTGCTAAATCGATGAACAAATTTTCTCACAACCTGCTGATTACAGTTCAT
AATTTTGTATGCAAAATTAATGAAGACACAGAGCTGTTGTTTACGCTCTACGATGGTGAT
CGAATGAAAGCAATAACAGAAAATTATCTCATCAAATGGAACAGACAAGGTGGAGCCCAA
TATTTTAGTAATAATTTACGAGCTCTTTTTACTGATTTGAGTTCTGAGGATCTTCAACGT
AATAAAATATTCCTTGTCGCTTATGTCATTAGAATTGGTGCAATGGAATGTAAAGAATCA
GAATCGAGAAGAGTCAGTGTTACCAGTAATGTTTTGTCAAAGAGAGTTTCTACATCAAGT
CAAAATAATTCAACTGCAAATCTCAATGAAAGTTTAATGCGACGTCCTTTTGGAGTTGCT
GCAATCGATCTAACACCAATGATTAGAAAAGAAGAAGATTTTAAAAGTGACACTCAATTA
TCGATGCCATTCATCACATGCGAAAAAGAATCATTAGACATGACACTTAGAAAGTTATTT
AATAACAAAGATATTGGAAAAGATGGCTCAAATATTTGGATAAGTGTTGAGTTATTGCAT
GGTGACTTGAAACAAATAAAAGAGGAATATCCACATTTAATTGTTGGAAACATGGCACAT
GCTCGTAAAATGGGATTTCCTGAAGTTATTTATCCGGGCGACGTTCGAAACGATTTGTAC
GTGACACTTGTGAATGGTGAATTTTCAAGAAGCACGACTAGAACGGCTGACAAAAATATT
GAAGTGATTGTTTCGGTATGCAATGAGAATGGAGTGAGTGTAAAGGATGTTATAACACAA
GGTGGAGGTGCGACAATGGTCAGTGAATACCGTTCAGTAATTTATTATCATGACGACAAA
CCAAAATGGAATGAAACTTTCAAAATTAATGTGCCAATTGATGACTTTACAAAATGTCAT
CTTAAATTTCTTTTTAAACATCGAAGTTCAAATGATTCAAAGGATAAAAATGAAAAACCA
TTTGCAATTGCTTTCATAAAATTACAAAAGACAAATGGAACAATTTTACAACAAGGAAAT
CATACGCTAGTCGTTTATAAAATTGACCATAAAAAACTTGATGAGAGTACACAATTTAAT
TATTATTCATTACCTTCTGAAAATTTTGAGTTACTTGCAACACCAAAACCCTCGTTGGCT
CCTTATTCACTTTTACCAAAAGATACATTTGTCATTGATGTTAATTTATGCAGCACAAAG
CTTACACAAGATGTCGACTTACTTGGTTTACTGCAATGGAATAACAATACAAATAAAGAA
ACTCTGGAAATTTCTCTAAATCAACTTTTAAAACCAGTACCATCAGAAGAAATTGTAAAA
TTTCTACAAGACATACTCGATGCTCTCTTCAATATTCTAGTTCAAAATGATGAAATGCTT
TATGATGATCTTGTTTTTCAATGTTTAATTCGTCTCATTGAAATAGTGAGTGATAAAAAA
TATCAGCATTTTCAATCAGTTCTTGATCTTTATATAAATGAAAGTTTTTCATCAACACTT
GCTTATAAGAAGTTGATTAAAGTTCTTGAAAGTCATTTCTATGGTGCAATTGGTAGCATA
AAAAAGAGTCCTACATTACATGATGATAATGAAAATCCAGCAGAAAAGAAACTTTACAAA
ACAATCAAAAATTTGCAATACATTATGAAATTTATCATTCGATCGAGACTTTTGTATGCA
AAATTATATCAAGACCATGATCAATATTCATTTGAAACGAGTCTAGAAGAGTTGATGGCA
CTATTTGTCGATTTAATTCAGTTACCCAATTCACTTCTAACATCGCAAGGTGCCATTTTT
AAATATTTGCATGTGATTGCAAGCGATTTGATGGAAGTTTACGATCCACTGAAATTAAGC
AATTTTATTGTGGAAATTATTACAAAATTACCACCAGGACGTTTGACTCAATGTAAAATG
AAGTGCATTAAAGATCTTGTTGGGTCTAAAATCTTCCGTATGCCATTGTGCCGTGGAATT
TTATTGCCAGTCTTTTGTGCGCAAATAAAAGATAAATTAGAGTCTAAGGAAGAGGTCGCT
GAATGTGTGAATATTATGAACAATATATTGGAATTGTTATTTTCCAAAGATATTGGTGAT
ACAGATAATGACATTCGTGATATCATGCTAATATTACTACGAACAGTAATTCAATCATCG
ATTGCAATGGATCGTGATAATCCATTAGTTGGAAATTTAGTTGCAATTATGCTAGCCATA
TTCAGAAGCATGACAGAGAATCATTACAAAATGTATGTGAATCATTTTTATTCTCGTTTC
GATTTACAAGAATTTCTTACGGAAATTTTCATGGTGTACAAAGAACTCATTTCAAAGCCT
GTATTTGCACCAGATTGGCTTGATATGATAATGCATCAAAATACAGTCATTCTTGAGAGT
CTTCATCATTTTGCAAGAATCATCCGTGAACATTTCTCTGATCCATTTGAGAAGCAAGTA
TGGTCAAATTTCTTTCACTGTTCAATTGCATTTTTGACACAACCAGCACTTCAATTGGAT
CAATTTACACGCAATAAAACTTCGATGATACTAGCAAGATATTGTGACATTCGACGAGAA
GCGGCTAAAGAAATTTGCAGTATGTGGTACAGCTTAGGACAGCACAAGCAATTTTTCGTG
CCACAAATGGTTGGTCCATTTCTCGAAATGTCAATGATAAAAGAGACAGAATTAAGGAAA
GAAACAATTCCGATATTTTTTGACATGATGCAATGTGAATATTTGTCATCGAAGCTCATA
AATGATAGTTTTGGAGACACTAAGCGAAATATTTCACACATTCGTGGACATTTTCGCGAG
TTTGAAAGAGAGATGATTGAGAAGCTCGACATTTATGTAGAAGGGGGCCGTGGAGATGAT
GAATATAAAGATCTTTTTAATGAAATTATGACGAATTTATGTCGAAATCACATTGCTCTT
CATCAAGATGGAATTACTTTTGTTAATATGGCAACAAAATTGATGGAACGATTACTTGAA
TATCGTTTTCTAATAAATGATGAAAGTAAAGAAAATAGAATGTCATGCACTGTGAGTCTT
TTACAATTTTATGAAGTCAATAGAAAGGAAATGTATATCCGTTATGTCAATAAACTTCGA
GAACTTCATATGGAATTTGATAACTACGCAGAAGCTGCATTTACACTGAAACTTCATAGC
AATCTCTTGCAATGGAATGATACACAATTGCCTCCGTTGCTAAAGTCCAGTAAACATGCA
CATTGCACCACACATAGATCATTGAAAGAAACACTCTATAATGAAATCATCGAATATTTT
GATCAGGGAAATATGTGGGAGAGTGCATTGGAAGTTTGCAAAGAACTTGTTAAACAATAT
GAATTTGAAACATATGATTATGAAAGTTTGAGTGCATTGCACATTAAAATGTCAGATTTT
TATAAAAACATTGTTTCGGAAATGCGACACGATGTTGAGTACTTTAGAGTAACATTTTAT
GGATTTGGTTTTCCTGAATTATTGCGGAATAAAACTTTTATTTATCGTGGAAAAGAATAT
GAACAATTGCAATCATTTTGTTCAAGAATTCTAAGTCAACATCCAAAAGCTGAAATTATG
CAAACATTGGAAAAACCAGGAGAAGATATAACAAAAAGTGATGGACAATATATTCAAATT
AATAAAGTTGAGCCAATTATGAGCGAGAAACATCAAAAGTTGTATGAATCGGCACAGTCA
AAGAGAATAGCAAAATCTATCGTAAAATATTACAAAACAAATGACGTCGATCATTTCAAA
TTTTCACGACCATTCCGTGACACATCGAAAAATTGGATGTCATCAAGTGAATCTGATAAT
GTTGGAAATTTATGGCTTGAAAGAACAGTGATGAAAACTTTATATCCATTACCAGGCATT
TTAAAATGGTTCCCTGTTGAAACATCAGAAACATTTAATGTTTCACCTATCGAATGTGCT
ATTGAAATGATGGAAGCAAACAATAAAATGCTTCGTGATTTAGTGATTGAACATCAAAAT
GACAGCACTGCAGCGTTAGCTCAGTTAACGATGAAAATTCAAGGTGTTGTTGATGCGGCT
GTTAATGGTGGAACGAGTAAATATGAGGAAGCTTTCTTAACTGACGATTACTTGAAAATG
AATCCAAGCGATGTAAAATTTGTGGAAACGTTGAAAAACCTAATTGCTGATCAAATCCCA
ATTTTGGAAGTTGCGCTATCTGTACATAAAGCTAAAGCAAAACCAGAAATTTTACCACTT
CATGAACGCTTAGAAGAATGCTTCACAAAAATGCAAGTACATGTTGAATCAATGTACGGA
AAACGAACAACTGATTTAAAATTTGAGAAAGATAATTCTGTCGTGTTGCGAAAAGATGTT
TTAAAAACACCACATGACAATCGTTTAAGTGAAACAAGCATGGGTTCTTCTGATAGCGGA
ATTTCAAATCGTCGACAAATCACAACTGCAATTAATAAAGTTTTCAACTTCAACTCACCA
CCATCGTTCACTAGTGTGAGACAAACAATGGTGACATCTTCTCCACTAAATAAAAAATCT
AAAGACAAGATGTCAACACAAAAAAGGCGCAACAGTAAAAAGATGGACAGAGAAATCTTG
AGTTTGCCAAATAGTCAATTTTATACAGCTGCAGTCTCGTCACTTACAATGAAATTAAGT
ACCATCGCACAAACGCCGACAGAAAAAGAGGAGAAAGAAAATTTTGGTGTATTGTCAGCA
GCAACTTCTTCAACTACAATCGTTTCTAATCCAACTACACCAGTTTTTGAATTAACTGAA
GAGCTTACACCAAAAAGACCATTGAGATCAGAAATTGAGAAAGAAAAACGTTTATCACGA
ACACAAAGTGTAATTGTCGCAAATAATTCAAATGGAGTAACAAATAAAGTTGACAATGCA
TCAGTCTCGGGTGAAAGTAGTAATAGCAGAAATTCGATAATTACAACAGATTCGCAAACA
AGCGAAGAAGACAGTCTTGTTCCACCGCCACTTCCCTTAAAGCATCGCGATTCTGATTTT
GGAAATTTATCGTTAGAAGATACTCTTTATTCAAGAGCACCATCAAATCGAGCATCCACC
GGTTCTGATCGTTATCATATTTTCAATCGTCCTTTGCCTGCTGCACCCACTCATGGTAGT
GACGATTTCATTGCAAGCAATAGTCATTATGAAGTGTTGGAAATCAGAAATCGTGAAGTA
ATTGAAGCAACGGAAGCAAAAATCATCGGAAAGAAATTAGCACCACAGCCGCCTCCTAAA
CCCGTGCGAAATAATTCTAAAACAAGCAACATGCCGATGTCACCATAA

>g1210.t2 Gene=g1210 Length=1995
MESWKSVGKQYLFGIAKHNFQQDDKPHRLCLDVGDSLIIIRESAHWYYGYKKKNRSLKGI
FPKTYVHLIADVEIARGEYVIKRSEIVDEITTILKEWHEHFKKFYLTNNPNLKVLREKML
ELIKLRSQMLSGNLPVDEMKDKKMKATSQIDTGNKLLGLDMVVRDDNGNILDINNTSTTE
LYEQHVQATRRIRRATTEINKKPPAKSMNKFSHNLLITVHNFVCKINEDTELLFTLYDGD
RMKAITENYLIKWNRQGGAQYFSNNLRALFTDLSSEDLQRNKIFLVAYVIRIGAMECKES
ESRRVSVTSNVLSKRVSTSSQNNSTANLNESLMRRPFGVAAIDLTPMIRKEEDFKSDTQL
SMPFITCEKESLDMTLRKLFNNKDIGKDGSNIWISVELLHGDLKQIKEEYPHLIVGNMAH
ARKMGFPEVIYPGDVRNDLYVTLVNGEFSRSTTRTADKNIEVIVSVCNENGVSVKDVITQ
GGGATMVSEYRSVIYYHDDKPKWNETFKINVPIDDFTKCHLKFLFKHRSSNDSKDKNEKP
FAIAFIKLQKTNGTILQQGNHTLVVYKIDHKKLDESTQFNYYSLPSENFELLATPKPSLA
PYSLLPKDTFVIDVNLCSTKLTQDVDLLGLLQWNNNTNKETLEISLNQLLKPVPSEEIVK
FLQDILDALFNILVQNDEMLYDDLVFQCLIRLIEIVSDKKYQHFQSVLDLYINESFSSTL
AYKKLIKVLESHFYGAIGSIKKSPTLHDDNENPAEKKLYKTIKNLQYIMKFIIRSRLLYA
KLYQDHDQYSFETSLEELMALFVDLIQLPNSLLTSQGAIFKYLHVIASDLMEVYDPLKLS
NFIVEIITKLPPGRLTQCKMKCIKDLVGSKIFRMPLCRGILLPVFCAQIKDKLESKEEVA
ECVNIMNNILELLFSKDIGDTDNDIRDIMLILLRTVIQSSIAMDRDNPLVGNLVAIMLAI
FRSMTENHYKMYVNHFYSRFDLQEFLTEIFMVYKELISKPVFAPDWLDMIMHQNTVILES
LHHFARIIREHFSDPFEKQVWSNFFHCSIAFLTQPALQLDQFTRNKTSMILARYCDIRRE
AAKEICSMWYSLGQHKQFFVPQMVGPFLEMSMIKETELRKETIPIFFDMMQCEYLSSKLI
NDSFGDTKRNISHIRGHFREFEREMIEKLDIYVEGGRGDDEYKDLFNEIMTNLCRNHIAL
HQDGITFVNMATKLMERLLEYRFLINDESKENRMSCTVSLLQFYEVNRKEMYIRYVNKLR
ELHMEFDNYAEAAFTLKLHSNLLQWNDTQLPPLLKSSKHAHCTTHRSLKETLYNEIIEYF
DQGNMWESALEVCKELVKQYEFETYDYESLSALHIKMSDFYKNIVSEMRHDVEYFRVTFY
GFGFPELLRNKTFIYRGKEYEQLQSFCSRILSQHPKAEIMQTLEKPGEDITKSDGQYIQI
NKVEPIMSEKHQKLYESAQSKRIAKSIVKYYKTNDVDHFKFSRPFRDTSKNWMSSSESDN
VGNLWLERTVMKTLYPLPGILKWFPVETSETFNVSPIECAIEMMEANNKMLRDLVIEHQN
DSTAALAQLTMKIQGVVDAAVNGGTSKYEEAFLTDDYLKMNPSDVKFVETLKNLIADQIP
ILEVALSVHKAKAKPEILPLHERLEECFTKMQVHVESMYGKRTTDLKFEKDNSVVLRKDV
LKTPHDNRLSETSMGSSDSGISNRRQITTAINKVFNFNSPPSFTSVRQTMVTSSPLNKKS
KDKMSTQKRRNSKKMDREILSLPNSQFYTAAVSSLTMKLSTIAQTPTEKEEKENFGVLSA
ATSSTTIVSNPTTPVFELTEELTPKRPLRSEIEKEKRLSRTQSVIVANNSNGVTNKVDNA
SVSGESSNSRNSIITTDSQTSEEDSLVPPPLPLKHRDSDFGNLSLEDTLYSRAPSNRAST
GSDRYHIFNRPLPAAPTHGSDDFIASNSHYEVLEIRNREVIEATEAKIIGKKLAPQPPPK
PVRNNSKTSNMPMSP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g1210.t2 CDD cd11872 SH3_DOCK_AB 13 68 1.88767E-23
12 g1210.t2 Coils Coil Coil 1541 1561 -
8 g1210.t2 Gene3D G3DSA:2.30.30.40 SH3 Domains 2 70 1.8E-11
9 g1210.t2 Gene3D G3DSA:1.20.1270.350 - 80 175 3.3E-29
10 g1210.t2 Gene3D G3DSA:2.60.40.150 - 436 627 7.8E-70
11 g1210.t2 Gene3D G3DSA:1.25.40.410 - 1222 1369 2.4E-59
7 g1210.t2 Gene3D G3DSA:1.20.58.740 - 1535 1664 4.9E-43
18 g1210.t2 MobiDBLite mobidb-lite consensus disorder prediction 1730 1755 -
15 g1210.t2 MobiDBLite mobidb-lite consensus disorder prediction 1850 1897 -
17 g1210.t2 MobiDBLite mobidb-lite consensus disorder prediction 1850 1885 -
16 g1210.t2 MobiDBLite mobidb-lite consensus disorder prediction 1970 1995 -
4 g1210.t2 PANTHER PTHR45653 DEDICATOR OF CYTOKINESIS 11 1722 0.0
2 g1210.t2 Pfam PF16172 DOCK N-terminus 79 427 1.1E-90
3 g1210.t2 Pfam PF14429 C2 domain in Dock180 and Zizimin proteins 432 625 1.6E-55
1 g1210.t2 Pfam PF06920 Dock homology region 2 1156 1656 4.2E-90
19 g1210.t2 ProSiteProfiles PS50002 Src homology 3 (SH3) domain profile. 9 71 14.085
21 g1210.t2 ProSiteProfiles PS51650 DHR-1 domain profile. 436 617 51.467
20 g1210.t2 ProSiteProfiles PS51651 DHR-2 domain profile. 1243 1664 82.912
14 g1210.t2 SMART SM00326 SH3_2 12 70 2.6E-6
6 g1210.t2 SUPERFAMILY SSF50044 SH3-domain 11 72 8.04E-7
5 g1210.t2 SUPERFAMILY SSF48371 ARM repeat 626 1195 4.78E-5

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0007264 small GTPase mediated signal transduction BP
GO:0005085 guanyl-nucleotide exchange factor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values