General information for g1210.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dedicator of cytokinesis protein 2.
Parent gene
- The parent gene g1210 is located on chr_3: 8784995..8789566 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1210 | g1210.t3 | isoform | g1210.t3 | 8778765 | 8789566 |
| chr_3 | g1210 | g1210.t3 | exon | g1210.t3.exon1 | 8778765 | 8779226 |
| chr_3 | g1210 | g1210.t3 | cds | g1210.t3.CDS1 | 8778765 | 8779226 |
| chr_3 | g1210 | g1210.t3 | exon | g1210.t3.exon2 | 8779297 | 8779412 |
| chr_3 | g1210 | g1210.t3 | cds | g1210.t3.CDS2 | 8779297 | 8779412 |
| chr_3 | g1210 | g1210.t3 | exon | g1210.t3.exon3 | 8779550 | 8779703 |
| chr_3 | g1210 | g1210.t3 | cds | g1210.t3.CDS3 | 8779550 | 8779667 |
| chr_3 | g1210 | g1210.t3 | exon | g1210.t3.exon4 | 8779763 | 8779922 |
| chr_3 | g1210 | g1210.t3 | exon | g1210.t3.exon5 | 8780173 | 8780284 |
| chr_3 | g1210 | g1210.t3 | exon | g1210.t3.exon6 | 8789481 | 8789566 |
| chr_3 | g1210 | g1210.t3 | TSS | g1210.t3 | NA | NA |
| chr_3 | g1210 | g1210.t3 | TTS | g1210.t3 | NA | NA |
Sequences
>g1210.t3 Gene=g1210 Length=1090
ATTTCCGCAGTTTCGAGTCGATCCTTTGCTTTCAGCCGATAAAGATTGAAGTTATTTTGA
TTGTGAAAAGACAATTATTCACTTTGCCAAACATAATTTTCAACAAGACGATAAGCCGCA
CAGATTGTGTTTGGATGTCGGTGACAGTTTAATAATCATTCGTGAAAGTGCGCATTGGTA
CTATGGATATAAAAAGAAAAATCGTTCATTGAAAGGCATTTTTCCAAAAACTTATGTTCA
TCTTATTGCCGACGTTGAGATTGCTCGAGGTGAATACGTAATTAAACGTAGTGAAATTGT
CGACGAAATAACAACAATTTTGAAGGAATGGCACGAGCATTTTAAGAAATTTTACTTGAC
AAATAATCCAAATTTAAAAGTGCTCCGTGAAAAGATGCTTGAGTTAATTAAACTGCGTTC
TCAAATGCTGTCGGGAAATCTGCCAGTGGATGAAATGAAAGACAAAAAAATGAAAGCAAC
ATCACAAATCGACACAGGAAATAAATTATTGGGTCTTGATATGGTTGTTCGTGATGATAA
TGGAAACATATTGGACATTAATAATACTTCGACAACGGAACTTTATGAGCAACACGTTCA
AGCAACAAGACGCATTCGACGTGCAACGACGGAAATCAATAAGAAACCTCCTGCTAAATC
GATGAACAAATTTTCTCACAACCTGCTGATTACAGTTCATAATTTTGTATGCAAAATTAA
TGAAGACACAGAGCTGTTGTTTACGCTCTACGATGGTGATCGAATGAAAGCAATAACAGA
AAATTATCTCATCAAATGGAACAGACAAGGTGGAGCCCAATATTTTAGTAATAATTTACG
AGCTCTTTTTACTGATTTGAGTTCTGAGGATCTTCAACGTAATAAAATATTCCTTGTCGC
TTATGTCATTAGAATTGGTGCAATGGAATGTAAAGAATCAGAATCGAGAAGAGTCAGTGT
TACCAGTAATGTTTTGTCAAAGAGAGTTTCTACATCAAGTCAAAATAATTCAACTGCAAA
TCTCAATGAAAGTTTAATGCGACGTCCTTTTGGAGTTGCTGCAATCGATCTAACACCAAT
GATTAGAAAA
>g1210.t3 Gene=g1210 Length=232
MLELIKLRSQMLSGNLPVDEMKDKKMKATSQIDTGNKLLGLDMVVRDDNGNILDINNTST
TELYEQHVQATRRIRRATTEINKKPPAKSMNKFSHNLLITVHNFVCKINEDTELLFTLYD
GDRMKAITENYLIKWNRQGGAQYFSNNLRALFTDLSSEDLQRNKIFLVAYVIRIGAMECK
ESESRRVSVTSNVLSKRVSTSSQNNSTANLNESLMRRPFGVAAIDLTPMIRK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g1210.t3 | Gene3D | G3DSA:1.20.1270.350 | - | 1 | 57 | 0 |
| 2 | g1210.t3 | PANTHER | PTHR45653 | DEDICATOR OF CYTOKINESIS | 1 | 230 | 0 |
| 1 | g1210.t3 | Pfam | PF16172 | DOCK N-terminus | 1 | 229 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007264 | small GTPase mediated signal transduction | BP |
| GO:0005085 | guanyl-nucleotide exchange factor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
