General information for g12103.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as RanBP-type and C3HC4-type zinc finger-containing protein 1.
Parent gene
- The parent gene g12103 is located on chr_1: 20942021..20942612 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12103 | g12103.t1 | isoform | g12103.t1 | 20940570 | 20942263 |
| chr_1 | g12103 | g12103.t1 | exon | g12103.t1.exon1 | 20940570 | 20942171 |
| chr_1 | g12103 | g12103.t1 | cds | g12103.t1.CDS1 | 20940570 | 20942171 |
| chr_1 | g12103 | g12103.t1 | exon | g12103.t1.exon2 | 20942234 | 20942263 |
| chr_1 | g12103 | g12103.t1 | cds | g12103.t1.CDS2 | 20942234 | 20942263 |
| chr_1 | g12103 | g12103.t1 | TSS | g12103.t1 | 20942389 | 20942389 |
| chr_1 | g12103 | g12103.t1 | TTS | g12103.t1 | NA | NA |
Sequences
>g12103.t1 Gene=g12103 Length=1632
ATGGCAAGTGATACTAAGCAAAGACCTAAGGTCAAACCCAAAACTTTGACACTTTCGTTC
AACAATGATGACATTATTGTAATTGAAGATTCTAACGATGTTCCTGTTAACTTGAATGGT
ACCTTTATCGATTTAACTGATGAAAATAGTAATAAACCAAATGATATTTCATCAGTTTAT
GGTAACGAAAAGAAAAAGAGAACACTTGAATTTGATATGATGATAAGCAAAGACATTATA
AATTTATCGACTCATTTTCCACAAACAAATGTTTCTCAGGCAAAAATGATTGATTTTAAC
AATAATCCGCAACCATCAACAAGTAAACAAGCGATCGCCGCTGATGCAGCATTGAAAGCT
ACTACTGCGAAAAATTTAGAGCTTCGAAAGGCAAACACTTCTAGAAAAGCTTTAGAGTTG
TCTTTGCATACGAGTGCTATTTTAAAAGAACTAAGCAATACGAACAATACAACTGATAAA
TCAGCATCAACTTATCAAAAGTTACTTGAAATTGGCAAGAAAAGTCTTATTGAAAATCAA
GAAGAGTTTGTTTGCTCTCTTTGCAATGGATTCTGTACAAAAGGTATTGGAGTTACTTTA
AAATATTGTCTTCATTCATTTTGTCGACCTTGTCTTATACATACAATCAATACAAAGACT
GAATATGGTGCTGTGAAATGTCCACTACAAATAGAAAATGTAGAAAAGTGTGAATTCTTT
ATAGATGACGAAGAAATCAAAGAATTGTTAGGTGTGGATGGATATGCAGCATTCTTGCAA
AATGTTAAATTGACAATGGAGGAGATCGCTGATCGAGATCAGAAAGCACGTGATGAGGAA
GAATTACAACAATCGCTCATTCCTTTGCTGTTGAATATGGATGATCTGGAAACAATTCCA
AATTTGAAAGTTTTCGAGTGTCCTGTATGTTTTGTTGAAATAAACATCGGCGAAGGAGTT
GTTTTGAAAAACTGTTTACATCCTTGTTGTCGTGATTGTTTGGCTGGATGTGTTGCAGCA
GCAGATGATTTTGAAGTCAAATGTCCATTTATTCATCCAGATGATAATGCTCCTTGCAAT
GAGCGTCTTCAAGAACGCGAAATACGAAACCTTGTATCGTCAGATTTATTCGATAAGCAT
CTTCAAAAATCATTGAATGTTGCAGAGAGTGCTAACGAAATGACTTTCCATTGCCGAACA
TTGAACTGCCCTAACTTTGTTGAAATCGATCCACAAATTACAAGCTATATTTGTGAAGTA
TGTAAGAAACAAAACTGTATTAGCTGCAAAGCAATTCATGAAGGTAAAAGTTGCATCGAC
TATCAAGAAGAAATGAATCCAGATCTCAAGCAACAAAGAATTAATAATGAAAACTTACAA
TCGCAAACAGCCATAGAAATGGAAATCAGAGAAGGAAAAGCAATGTATTGTCCAAGATGT
AAAATACCAGTTCAAAAAATTGCTGGCTGTGACTATATTACTTGTATAGCATGCAAACTT
GGAATATGTTGGTGCACAAAAAAACCACGCCAAACATTTACAAAAGCTGATGGATCAATT
GTTGAAGGTTGCAAATGCAATGAAGCACCAAGATTTGAAAGATGTCATCCAAAATGCGGA
AACTGTCATTAG
>g12103.t1 Gene=g12103 Length=543
MASDTKQRPKVKPKTLTLSFNNDDIIVIEDSNDVPVNLNGTFIDLTDENSNKPNDISSVY
GNEKKKRTLEFDMMISKDIINLSTHFPQTNVSQAKMIDFNNNPQPSTSKQAIAADAALKA
TTAKNLELRKANTSRKALELSLHTSAILKELSNTNNTTDKSASTYQKLLEIGKKSLIENQ
EEFVCSLCNGFCTKGIGVTLKYCLHSFCRPCLIHTINTKTEYGAVKCPLQIENVEKCEFF
IDDEEIKELLGVDGYAAFLQNVKLTMEEIADRDQKARDEEELQQSLIPLLLNMDDLETIP
NLKVFECPVCFVEINIGEGVVLKNCLHPCCRDCLAGCVAAADDFEVKCPFIHPDDNAPCN
ERLQEREIRNLVSSDLFDKHLQKSLNVAESANEMTFHCRTLNCPNFVEIDPQITSYICEV
CKKQNCISCKAIHEGKSCIDYQEEMNPDLKQQRINNENLQSQTAIEMEIREGKAMYCPRC
KIPVQKIAGCDYITCIACKLGICWCTKKPRQTFTKADGSIVEGCKCNEAPRFERCHPKCG
NCH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g12103.t1 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 142 | 252 | 5.2E-8 |
| 13 | g12103.t1 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 302 | 393 | 1.1E-10 |
| 12 | g12103.t1 | Gene3D | G3DSA:1.20.120.1750 | - | 457 | 534 | 2.7E-5 |
| 1 | g12103.t1 | PANTHER | PTHR22770:SF35 | RANBP-TYPE AND C3HC4-TYPE ZINC FINGER-CONTAINING PROTEIN 1 | 159 | 260 | 3.6E-80 |
| 3 | g12103.t1 | PANTHER | PTHR22770 | UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED | 159 | 260 | 3.6E-80 |
| 2 | g12103.t1 | PANTHER | PTHR22770:SF35 | RANBP-TYPE AND C3HC4-TYPE ZINC FINGER-CONTAINING PROTEIN 1 | 264 | 543 | 3.6E-80 |
| 4 | g12103.t1 | PANTHER | PTHR22770 | UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED | 264 | 543 | 3.6E-80 |
| 11 | g12103.t1 | ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 203 | 212 | - |
| 16 | g12103.t1 | ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 185 | 229 | 8.89 |
| 17 | g12103.t1 | ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 303 | 539 | 23.055 |
| 15 | g12103.t1 | ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 307 | 349 | 8.58 |
| 9 | g12103.t1 | SMART | SM00184 | ring_2 | 185 | 230 | 0.25 |
| 10 | g12103.t1 | SMART | SM00184 | ring_2 | 307 | 351 | 0.19 |
| 8 | g12103.t1 | SUPERFAMILY | SSF57850 | RING/U-box | 178 | 229 | 2.45E-7 |
| 6 | g12103.t1 | SUPERFAMILY | SSF57850 | RING/U-box | 303 | 386 | 1.09E-7 |
| 5 | g12103.t1 | SUPERFAMILY | SSF57850 | RING/U-box | 379 | 444 | 4.82E-7 |
| 7 | g12103.t1 | SUPERFAMILY | SSF57850 | RING/U-box | 465 | 511 | 2.07E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
