Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12103 g12103.t198 TTS g12103.t198 20938173 20938173
chr_1 g12103 g12103.t198 isoform g12103.t198 20939003 20940570
chr_1 g12103 g12103.t198 exon g12103.t198.exon1 20939003 20939083
chr_1 g12103 g12103.t198 exon g12103.t198.exon2 20939355 20939629
chr_1 g12103 g12103.t198 exon g12103.t198.exon3 20939689 20939910
chr_1 g12103 g12103.t198 cds g12103.t198.CDS1 20939695 20939910
chr_1 g12103 g12103.t198 exon g12103.t198.exon4 20940115 20940570
chr_1 g12103 g12103.t198 cds g12103.t198.CDS2 20940115 20940207
chr_1 g12103 g12103.t198 TSS g12103.t198 NA NA

Sequences

>g12103.t198 Gene=g12103 Length=1034
GACGTGCCAATATAACACTTTTCATATCATTATATTTTAAAGAAGAATAATAAAGAAATT
GAATTATCAGTTTATATGAATTTTGTTGTTTATTCATTTATTCCCACATTTTTCAGTAGA
ATATATAATTCACATTATACGTCTCTTGATTAACTGTTTATCCTTGTTTTTGGGCTAATT
CACGAGCTTTAGCCTTTTCAACCTTAGCAATACGAGCCATTGATTTTGGTCCGAGTAAAC
CACCACCCCAATGACGACGAATTTCATCATAACGATCATTATAGTTGGTCTTAATTGATT
CCACGATCTTTGAGAAGTTTGCGCGATCAGCATTATCAACATTGCACAAAGCTAAAGTTG
TGCATGTTTTGCGATGAACCAAACGTCCCAATCGTGATTTGCCCTTTACGATGCAATATG
GAACTCCCATTTTACGGCATAAGGCTGGCAAAAAGATCGATTGGATCAACGTCATGTGAG
ATGACAACTAATTGTGCCTTCTTTTGCTCAACCAACTTGGTGACTGTGTTGCAACCAGCT
CTCAATGTCAATTTCTTCTTTGATGGAGCATCATCCTTGCCTGCAACCTTTTCTTCAGCC
TTTTTCTTCAAACGAGCAGCTTTTTGCAACTTTGATTCTGGACGATATTTTTCCAAAACT
TTAAATAATTGAACGGCTGTTTGCTTATCTAAAGCTTGAGAAAATTGATTAATTGGTGGT
GGAACCTTCAATCTTTTTTGCAAGATAGCTTTATGGCGCTGAATACGAATATATTTTGGC
CATCTAACGAAACGTGATAGATCACGTTTTGGTTGAACGTTTTGACCAATACCATAATTC
TTGGGACGTTTTTCGAACAATGGATTGCTAGCAGTTTTCTTTTGTACTGCTGATTTTGAA
AGAGGAGCAGCAGCCACTTTTTTACCAACAACCTTCTTTTTGCTTACTGGCTGCGACCAT
TTTGATATATTTTCCACGTTATTTTTTGCGGAGATGTTTTCGTCAATTCAAAGACGAGGG
GAAAAAGAAAGATC

>g12103.t198 Gene=g12103 Length=102
MFCDEPNVPIVICPLRCNMELPFYGIRLAKRSIGSTSCEMTTNCAFFCSTNLVTVLQPAL
NVNFFFDGASSLPATFSSAFFFKRAAFCNFDSGRYFSKTLNN

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed