General information for g12103.t250
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12103 is located on chr_1: 20942021..20942612 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12103 | g12103.t250 | TTS | g12103.t250 | 20938173 | 20938173 |
| chr_1 | g12103 | g12103.t250 | isoform | g12103.t250 | 20939003 | 20940570 |
| chr_1 | g12103 | g12103.t250 | exon | g12103.t250.exon1 | 20939003 | 20939089 |
| chr_1 | g12103 | g12103.t250 | exon | g12103.t250.exon2 | 20939356 | 20939627 |
| chr_1 | g12103 | g12103.t250 | exon | g12103.t250.exon3 | 20939688 | 20939914 |
| chr_1 | g12103 | g12103.t250 | cds | g12103.t250.CDS1 | 20939695 | 20939914 |
| chr_1 | g12103 | g12103.t250 | exon | g12103.t250.exon4 | 20940116 | 20940570 |
| chr_1 | g12103 | g12103.t250 | cds | g12103.t250.CDS2 | 20940116 | 20940207 |
| chr_1 | g12103 | g12103.t250 | TSS | g12103.t250 | NA | NA |
Sequences
>g12103.t250 Gene=g12103 Length=1041
GACGTGCCAATATAACACTTTTCATATCATTATATTTTAAAGAAGAATAATAAAGAAATT
GAATTATCAGTTTATATGAATTTTGTTGTTTATTCATTTATTCCCACATTTTTCAGTAGA
ATATATAATTCACATTATACGTCTCTTGATTAACTGTTTATCCTTGTTTTTGGGCTAATT
CACGAGCTTTAGCCTTTTCAACCTTAGCAATACGAGCCATTGATTTTGGTCCGAGTAAAC
CACCACCCCAATGACGACGAATTTCATCATAACGATCATTATAGTTGGTCTTAATTGATT
CCACGATCTTTGAGAAGTTTGCGCGATCAGCATTATCAACATTGCACAAAGCTAAAGTTG
TGCATGTTTTGCGATGAACCAAACGTCCCAATCGTGATTTGCCCTTTACGATGCAATATG
GAACTCCCATTTTACGGCATAAGGCTGGCAAAAAGCACTTCGATTGGATCAACGTCATGT
GAGATGACAACTAATTGTGCCTTCTTTTGCTCAACCAACTTGGTGACTGTGTTGCAACCA
GCTCTCAATGTCAATTTCTTCTTTGATGGAGCATCATCCTTGCCTGCAACCTTTTCTTCA
GCCTTTTTCTTCAAACGAGCAGCTTTTTGCAACTTTGATTCTGGACGATATTTTTCCAAA
ACTTTAAATAATTGAACGGCTATTGCTTATCTAAAGCTTGAGAAAATTGATTAATTGGTG
GTGGAACCTTCAATCTTTTTTGCAAGATAGCTTTATGGCGCTGAATACGAATATATTTTG
GCCATCTAACGAAACGTGATAGATCACGTTTTGGTTGAACGTTTTGACCAATACCATAAT
TCTTGGGACGTTTTTCGAACAATGGATTGCTAGCAGTTTTCTTTTGTACTGCTGATTTTG
AAAGAGGAGCAGCAGCCACTTTTTTACCAACAACCTTCTTTTTGCTTACTGGCTTTTTAG
CGACCATTTTGATATATTTTCCACGTTATTTTTTGCGGAGATGTTTTCGTCAATTCAAAG
ACGAGGGGAAAAAGAAAGATC
>g12103.t250 Gene=g12103 Length=103
MFCDEPNVPIVICPLRCNMELPFYGIRLAKSTSIGSTSCEMTTNCAFFCSTNLVTVLQPA
LNVNFFFDGASSLPATFSSAFFFKRAAFCNFDSGRYFSKTLNN
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
