Gene loci information

Transcript annotation

  • This transcript has been annotated as Peroxisomal multifunctional enzyme type 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12123 g12123.t9 TSS g12123.t9 21151265 21151265
chr_1 g12123 g12123.t9 isoform g12123.t9 21151279 21152828
chr_1 g12123 g12123.t9 exon g12123.t9.exon1 21151279 21151566
chr_1 g12123 g12123.t9 exon g12123.t9.exon2 21151623 21151872
chr_1 g12123 g12123.t9 exon g12123.t9.exon3 21152021 21152605
chr_1 g12123 g12123.t9 cds g12123.t9.CDS1 21152057 21152605
chr_1 g12123 g12123.t9 exon g12123.t9.exon4 21152703 21152828
chr_1 g12123 g12123.t9 cds g12123.t9.CDS2 21152703 21152828
chr_1 g12123 g12123.t9 TTS g12123.t9 NA NA

Sequences

>g12123.t9 Gene=g12123 Length=1249
ATGGTTTTGAGATTTGACAATCGTGTTGTTGTTGTAACTGGTGCAGGTGCTGGTTTAGGT
AGAGAATATGCACTTTTATTTGGCAAGCGTGGTGCTAAAGTGGTTGTGAACGATCTTGGT
GGCAATTTTCATGGTGAAGGAAACTCATCTAGAGCTGCAGACTTGGTTGTAGAAGAAATT
AGAAAACTTGGAGGAACAGCAGTTGCTGATTACAATAGTGTCGTCGAAGGACATAAAATT
ATTGAAACTGCAATTTCAAATTATGGACGCATTGATGTGCTTGTTAATAATGCCGGAATT
CTTCGTGATAAATCAATTGCCAACATCTCGGATAATGACTGGAATTTAATTCATGATGTT
CACTTAAAGGGAAGCTTCATGACAACTCGTGCTGCTTGGCCATACTTTAAAAAACAAAAG
TTCGGTCGTATTATAATGACCACCAGTAATAGTGGAATTTATGGAAATTTCGGTCAAGCT
AACTATTCAGCAGCAAAGCTCGGTTTAATTGGATTAGCTAACACAGTTGCAATTGAAGTA
TGATAATATTAATTTTTAAATAGCTGCATCAAGAATGACAAAAGGTATTTTACCTGATGA
TCTATTTGATGAAATGAAACCAGAATTGATTGCACCAGTAGTGGTTTACTTATGTCATGA
AGACACAATGGATAATGGTCAAGTCATTGAGAGTGCAGTTGGTTTTGCAACAAAAGTTCA
TTTTGTACGAGGCAAGGGAAGTTTAATTCGAGATAGCATCAAAGATGTTCCAACACCTGA
AACTGTTAAGGCGAAATGGGGCAAAATTACTGACATGAAGAATGCAAAGCATTTCAATTC
AAATATGGAAGTCAGTTCTTCATTTGTCAGCGTTATGGATAGATTGAAAAATCCCTTGCC
TAAAGATACATTTGAAGATACTTACACTTATACATTCCGTGACACAATTCTATATGCATT
GGGAATTGGAGTTGGAACCGAAGATGAAAGCAATTTGAAATTCATTTATGAAAATCATCC
AAACTTTGCCGCATTCCCAACTTATGCAGTTATTCCTTCTATTATTATGCTAATGACATC
AAGCATAACACCATCAGCCCTGGAAAACTTTGATCTTTCTCAAGTCTTGCATGGCGAACA
ATTTATTGAAATTGTAAATCCTATGAGAACAGAAGGAACACTTACAACTCGTGGAAATGT
GATTGATGTTCAACAGAAAAAATCTGGTGTTGTTGTTACTACTGAATGT

>g12123.t9 Gene=g12123 Length=225
MTKGILPDDLFDEMKPELIAPVVVYLCHEDTMDNGQVIESAVGFATKVHFVRGKGSLIRD
SIKDVPTPETVKAKWGKITDMKNAKHFNSNMEVSSSFVSVMDRLKNPLPKDTFEDTYTYT
FRDTILYALGIGVGTEDESNLKFIYENHPNFAAFPTYAVIPSIIMLMTSSITPSALENFD
LSQVLHGEQFIEIVNPMRTEGTLTTRGNVIDVQQKKSGVVVTTEC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g12123.t9 Gene3D G3DSA:3.30.160.260 - 54 107 0.00000
5 g12123.t9 Gene3D G3DSA:3.10.129.10 Hotdog Thioesterase 112 225 0.00000
2 g12123.t9 PANTHER PTHR13078:SF56 PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 2 1 225 0.00000
3 g12123.t9 PANTHER PTHR13078 PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 2-RELATED 1 225 0.00000
1 g12123.t9 Pfam PF13452 N-terminal half of MaoC dehydratase 170 219 0.00013
4 g12123.t9 SUPERFAMILY SSF54637 Thioesterase/thiol ester dehydrase-isomerase 114 224 0.00000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed