Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12128 g12128.t2 isoform g12128.t2 21199171 21201145
chr_1 g12128 g12128.t2 exon g12128.t2.exon1 21199171 21199234
chr_1 g12128 g12128.t2 cds g12128.t2.CDS1 21199171 21199234
chr_1 g12128 g12128.t2 exon g12128.t2.exon2 21199314 21199537
chr_1 g12128 g12128.t2 cds g12128.t2.CDS2 21199314 21199537
chr_1 g12128 g12128.t2 exon g12128.t2.exon3 21199949 21201145
chr_1 g12128 g12128.t2 cds g12128.t2.CDS3 21199949 21201145
chr_1 g12128 g12128.t2 TSS g12128.t2 NA NA
chr_1 g12128 g12128.t2 TTS g12128.t2 NA NA

Sequences

>g12128.t2 Gene=g12128 Length=1485
ATGACACGCAAAATTGCCCTCTGTTTGATGGCGAGCGGTTGGATTGTTGGCTTTATTATT
GGTGGCATCCCATTAATTTGGAATAAATGGGAATACGCACAAGGATGCGAATTTGATCAG
ATATTTTACCCATGGTATATGGTTGGTGTTATTACGCCAGTATTTTCTATGGTCTGGCTC
ACCATGTCCTTCGTATACTGTAGAATATGGCGTGAAGCATCGAAGCAAGTAAAACAGCTT
CGAGTGACAGGCCAACAAGAAGGAACATCAGATTGGAAATCTGTACAGATGGTGCTATTG
ATTCTTGGATGTTTTACGATCTGTTGGCTACCGTATTTTATCGTAGCATGCTCACAAATT
TATAAAATCACTGAGAATAGCTCAGTTGTTGCATATATGGCAGCATTTACTCTTGCAATG
TCAAATTCATTTTTAAATCCAATAATTTACGCTTGGAAGAATTCAAATTTTCGTCAAGCA
TTTATAAATTTACTAAAATGTAAAAGTCCTGATACACTAGAACCAAGTCAAAGTATGCGA
TCGAACTTACATAGAAAAAGCTCATCAGCACAACACCAAGACACGCTATCAGGTGCTTTT
CCTAATTACTCAACACCTCCCTTCATGAAGAAAATTGAACCTATTAATGCAATGGGAATT
ACGTTCGAGGAAGATGAGGATAAAATTTCAGCATACGAATCATCATCACAATCGACCTCA
AATACCGCAAAGCCAAAACAATTATCTACCACAAATCCAGCTGCTGTAACTATTAAAATA
GAATCTGATACGACAAAGAATTCAATTATCATTTCTACTACAACCCTACCATCACTTCAA
CAAGACATTGATGATGACAATCGTTCTCATCCTATCATTACTTCCACTTCATCATCTTTG
CCTTCTTCTTCTCATCTTCCATCACCACCATCATTAGAAATCAAGCAACAAATTTCATTA
GAACAAAACTCAACATCACTACCACAACAAAAGCATCAAACAATTGGAATTGATAATGGA
ACAATGAAAACGGGAAATCTAATTGTAAATAAATTAATTGAAAACTATGGCTACGATAAT
AAAGACATTGTCGATGATGAAGGCATTATGAGGAAGTACAAAGAGAATTTTCTTAATGTC
AATGACTGTTCAATTGTCACCGTAATGAATGAAAGCTCCAAGAGAAAATCAAAGTCTGCA
AACAGCATAATTGTCACTAAACAACCAAACAAGAGTCAGAGTCATGGTTCTATCTATAAT
CACGATGTTTGCAAGTCAAATATTGCAGTCGATTCGAATAGCGTTAGAGCAGAAAAAACA
TCACAGTCTAATAAAAATCTTTTTCCAACATTTAATTTTGGTCGAAAGTATATATCGAAA
AGTTTTAATAGTGCCGTTGATGGGTTAAATAACAAACATCAGCAGCACTCAAATAGTACA
GAAAAATTTTACCCTAAAAGCACCGAACTCAATTTTCCCGCTTAA

>g12128.t2 Gene=g12128 Length=494
MTRKIALCLMASGWIVGFIIGGIPLIWNKWEYAQGCEFDQIFYPWYMVGVITPVFSMVWL
TMSFVYCRIWREASKQVKQLRVTGQQEGTSDWKSVQMVLLILGCFTICWLPYFIVACSQI
YKITENSSVVAYMAAFTLAMSNSFLNPIIYAWKNSNFRQAFINLLKCKSPDTLEPSQSMR
SNLHRKSSSAQHQDTLSGAFPNYSTPPFMKKIEPINAMGITFEEDEDKISAYESSSQSTS
NTAKPKQLSTTNPAAVTIKIESDTTKNSIIISTTTLPSLQQDIDDDNRSHPIITSTSSSL
PSSSHLPSPPSLEIKQQISLEQNSTSLPQQKHQTIGIDNGTMKTGNLIVNKLIENYGYDN
KDIVDDEGIMRKYKENFLNVNDCSIVTVMNESSKRKSKSANSIIVTKQPNKSQSHGSIYN
HDVCKSNIAVDSNSVRAEKTSQSNKNLFPTFNFGRKYISKSFNSAVDGLNNKHQQHSNST
EKFYPKSTELNFPA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g12128.t2 Gene3D G3DSA:1.20.1070.10 - 1 168 8.7E-35
21 g12128.t2 MobiDBLite mobidb-lite consensus disorder prediction 176 196 -
26 g12128.t2 MobiDBLite mobidb-lite consensus disorder prediction 230 252 -
23 g12128.t2 MobiDBLite mobidb-lite consensus disorder prediction 232 252 -
25 g12128.t2 MobiDBLite mobidb-lite consensus disorder prediction 397 416 -
22 g12128.t2 MobiDBLite mobidb-lite consensus disorder prediction 471 494 -
24 g12128.t2 MobiDBLite mobidb-lite consensus disorder prediction 471 486 -
2 g12128.t2 PANTHER PTHR24247:SF234 AGAP000369-PA 1 164 4.3E-48
3 g12128.t2 PANTHER PTHR24247 5-HYDROXYTRYPTAMINE RECEPTOR 1 164 4.3E-48
4 g12128.t2 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 94 118 1.9E-11
5 g12128.t2 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 132 158 1.9E-11
1 g12128.t2 Pfam PF00001 7 transmembrane receptor (rhodopsin family) 1 150 1.8E-20
8 g12128.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 6 -
16 g12128.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 7 27 -
11 g12128.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 28 46 -
14 g12128.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 47 69 -
9 g12128.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 70 97 -
13 g12128.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 98 123 -
12 g12128.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 124 128 -
15 g12128.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 129 152 -
10 g12128.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 153 494 -
27 g12128.t2 ProSiteProfiles PS50262 G-protein coupled receptors family 1 profile. 1 150 18.105
6 g12128.t2 SUPERFAMILY SSF81321 Family A G protein-coupled receptor-like 1 187 4.3E-31
20 g12128.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 27 -
17 g12128.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 42 64 -
18 g12128.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 98 120 -
19 g12128.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 130 152 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007186 G protein-coupled receptor signaling pathway BP
GO:0016021 integral component of membrane CC
GO:0004930 G protein-coupled receptor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed