General information for g12133.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Adenosylhomocysteinase.
Parent gene
- The parent gene g12133 is located on chr_1: 21225692..21227548 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12133 | g12133.t13 | TTS | g12133.t13 | 21223774 | 21223774 |
| chr_1 | g12133 | g12133.t13 | isoform | g12133.t13 | 21223873 | 21224481 |
| chr_1 | g12133 | g12133.t13 | exon | g12133.t13.exon1 | 21223873 | 21224414 |
| chr_1 | g12133 | g12133.t13 | cds | g12133.t13.CDS1 | 21223873 | 21224412 |
| chr_1 | g12133 | g12133.t13 | exon | g12133.t13.exon2 | 21224471 | 21224481 |
| chr_1 | g12133 | g12133.t13 | TSS | g12133.t13 | NA | NA |
Sequences
>g12133.t13 Gene=g12133 Length=553
TCTGCAAGCAGCAATGGAAGGATATGAAGTAACAACTATGGATGAAGCAGCCAGTGAAGG
AAATATTTTTGTTACAACAACTGGTTGCACAGACATCATTATGGGAGATCATTTTATGAA
AATGAAAGATGATTCAATTGTTTGTAATATTGGTCATTTTGATTGTGAAGTTAACGTAGC
TTGGCTTGAAGAAAATGCAAAGGAAAAAGTCAATATTAAGCCACAAGTTGATAGATTTGT
TTTAAGTAACGGCAATCACATTATTCTTTTGGCTGAAGGACGATTGGTTAATCTCGGTTG
TGCCAAGGGCCATCCATCGTTTGTGATGTCAAATTCTTTCTGTAACCAGACACTTGCCCA
AATTGAGCTTTGGACTAAAGCTGAAAAATATCCAGTTGGAGTTCATATGTTACCTAAGAA
ACTTGATGAGGAAGTCGCAGCACTTCATCTTGAAAAATTGGGAGTAAAACTTACAAAACT
CACAGAAAAGCAAGCTAAATATTTGGGACTTTGTGCAGAAGGACCATTCAAACCTGAATA
CTATCGCTACTAA
>g12133.t13 Gene=g12133 Length=179
MEGYEVTTMDEAASEGNIFVTTTGCTDIIMGDHFMKMKDDSIVCNIGHFDCEVNVAWLEE
NAKEKVNIKPQVDRFVLSNGNHIILLAEGRLVNLGCAKGHPSFVMSNSFCNQTLAQIELW
TKAEKYPVGVHMLPKKLDEEVAALHLEKLGVKLTKLTEKQAKYLGLCAEGPFKPEYYRY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g12133.t13 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 95 | 0 |
| 10 | g12133.t13 | Gene3D | G3DSA:3.40.50.1480 | - | 96 | 179 | 0 |
| 3 | g12133.t13 | PANTHER | PTHR23420 | ADENOSYLHOMOCYSTEINASE | 1 | 179 | 0 |
| 4 | g12133.t13 | PANTHER | PTHR23420:SF20 | ADENOSYLHOMOCYSTEINASE | 1 | 179 | 0 |
| 2 | g12133.t13 | Pfam | PF00670 | S-adenosyl-L-homocysteine hydrolase, NAD binding domain | 1 | 99 | 0 |
| 1 | g12133.t13 | Pfam | PF05221 | S-adenosyl-L-homocysteine hydrolase | 100 | 178 | 0 |
| 7 | g12133.t13 | SMART | SM00997 | AdoHcyase_NAD_2 | 1 | 99 | 0 |
| 8 | g12133.t13 | SMART | SM00996 | AdoHcyase_2 | 1 | 178 | 0 |
| 5 | g12133.t13 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1 | 100 | 0 |
| 6 | g12133.t13 | SUPERFAMILY | SSF52283 | Formate/glycerate dehydrogenase catalytic domain-like | 21 | 179 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed