Gene loci information

Transcript annotation

  • This transcript has been annotated as Adenosylhomocysteinase A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12133 g12133.t14 TTS g12133.t14 21223774 21223774
chr_1 g12133 g12133.t14 isoform g12133.t14 21223873 21224586
chr_1 g12133 g12133.t14 exon g12133.t14.exon1 21223873 21224198
chr_1 g12133 g12133.t14 cds g12133.t14.CDS1 21223873 21224198
chr_1 g12133 g12133.t14 exon g12133.t14.exon2 21224262 21224414
chr_1 g12133 g12133.t14 cds g12133.t14.CDS2 21224262 21224412
chr_1 g12133 g12133.t14 exon g12133.t14.exon3 21224471 21224586
chr_1 g12133 g12133.t14 TSS g12133.t14 NA NA

Sequences

>g12133.t14 Gene=g12133 Length=595
AGTGTGTGTTGTTGCTGGTTATGGAGATGTTGGTAAAGGTTGTGCTCAAGCTCTTCGATC
ATTTGGCGGCAGAGTTATTATTACAGAAATTGATCCAATCAATGCTCTGCAAGCAGCAAT
GGAAGGATATGAAGTAACAACTATGGATGAAGCAGCCAGTGAAGGAAATATTTTTGTTAC
AACAACTGGTTGCACAGACATCATTATGGGAGATCATTTTATGAAAATGAAAGATGATTC
AATTGTTTGTAATATTGGTCATTTTGATTTTGATAGATTTGTTTTAAGTAACGGCAATCA
CATTATTCTTTTGGCTGAAGGACGATTGGTTAATCTCGGTTGTGCCAAGGGCCATCCATC
GTTTGTGATGTCAAATTCTTTCTGTAACCAGACACTTGCCCAAATTGAGCTTTGGACTAA
AGCTGAAAAATATCCAGTTGGAGTTCATATGTTACCTAAGAAACTTGATGAGGAAGTCGC
AGCACTTCATCTTGAAAAATTGGGAGTAAAACTTACAAAACTCACAGAAAAGCAAGCTAA
ATATTTGGGACTTTGTGCAGAAGGACCATTCAAACCTGAATACTATCGCTACTAA

>g12133.t14 Gene=g12133 Length=158
MEGYEVTTMDEAASEGNIFVTTTGCTDIIMGDHFMKMKDDSIVCNIGHFDFDRFVLSNGN
HIILLAEGRLVNLGCAKGHPSFVMSNSFCNQTLAQIELWTKAEKYPVGVHMLPKKLDEEV
AALHLEKLGVKLTKLTEKQAKYLGLCAEGPFKPEYYRY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g12133.t14 Gene3D G3DSA:3.40.50.720 - 1 51 0e+00
11 g12133.t14 Gene3D G3DSA:3.40.50.720 - 52 78 0e+00
13 g12133.t14 Gene3D G3DSA:3.40.50.1480 - 79 158 0e+00
4 g12133.t14 PANTHER PTHR23420 ADENOSYLHOMOCYSTEINASE 1 51 0e+00
6 g12133.t14 PANTHER PTHR23420:SF20 ADENOSYLHOMOCYSTEINASE 1 51 0e+00
3 g12133.t14 PANTHER PTHR23420 ADENOSYLHOMOCYSTEINASE 51 158 0e+00
5 g12133.t14 PANTHER PTHR23420:SF20 ADENOSYLHOMOCYSTEINASE 51 158 0e+00
2 g12133.t14 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 1 51 0e+00
1 g12133.t14 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 52 157 0e+00
9 g12133.t14 SMART SM00997 AdoHcyase_NAD_2 1 78 0e+00
10 g12133.t14 SMART SM00996 AdoHcyase_2 1 157 3e-07
7 g12133.t14 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1 78 0e+00
8 g12133.t14 SUPERFAMILY SSF52283 Formate/glycerate dehydrogenase catalytic domain-like 21 158 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed