General information for g12133.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Adenosylhomocysteinase.
Parent gene
- The parent gene g12133 is located on chr_1: 21225692..21227548 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12133 | g12133.t16 | TTS | g12133.t16 | 21223774 | 21223774 |
| chr_1 | g12133 | g12133.t16 | isoform | g12133.t16 | 21223873 | 21224766 |
| chr_1 | g12133 | g12133.t16 | exon | g12133.t16.exon1 | 21223873 | 21224414 |
| chr_1 | g12133 | g12133.t16 | cds | g12133.t16.CDS1 | 21223873 | 21224388 |
| chr_1 | g12133 | g12133.t16 | exon | g12133.t16.exon2 | 21224478 | 21224766 |
| chr_1 | g12133 | g12133.t16 | TSS | g12133.t16 | 21225730 | 21225730 |
Sequences
>g12133.t16 Gene=g12133 Length=831
CGAGGAGACAACGACTGGAGTTCACAATCTTTACAACATGTTCAGGGAAAATAAACTTAA
AGTTCCTGCAATCAATGTAAATGATTCTGTTACCAAGAGCAAATTCGATAATCTCTATGG
ATGCCGTGAATCTTTAATTGATGGAATTAAGCGTGCTACTGATGTCATGATTGCAGGAAA
AGTGTGTGTTGTTGCTGGTTATGGAGATGTTGGTAAAGGTTGTGCTCAAGCTCTTCGATC
ATTTGGCGGCAGAGTTATTATTACAGAAATTGATCCAATCAATGCTCTGCAATGGAAGGA
TATGAAGTAACAACTATGGATGAAGCAGCCAGTGAAGGAAATATTTTTGTTACAACAACT
GGTTGCACAGACATCATTATGGGAGATCATTTTATGAAAATGAAAGATGATTCAATTGTT
TGTAATATTGGTCATTTTGATTGTGAAGTTAACGTAGCTTGGCTTGAAGAAAATGCAAAG
GAAAAAGTCAATATTAAGCCACAAGTTGATAGATTTGTTTTAAGTAACGGCAATCACATT
ATTCTTTTGGCTGAAGGACGATTGGTTAATCTCGGTTGTGCCAAGGGCCATCCATCGTTT
GTGATGTCAAATTCTTTCTGTAACCAGACACTTGCCCAAATTGAGCTTTGGACTAAAGCT
GAAAAATATCCAGTTGGAGTTCATATGTTACCTAAGAAACTTGATGAGGAAGTCGCAGCA
CTTCATCTTGAAAAATTGGGAGTAAAACTTACAAAACTCACAGAAAAGCAAGCTAAATAT
TTGGGACTTTGTGCAGAAGGACCATTCAAACCTGAATACTATCGCTACTAA
>g12133.t16 Gene=g12133 Length=171
MDEAASEGNIFVTTTGCTDIIMGDHFMKMKDDSIVCNIGHFDCEVNVAWLEENAKEKVNI
KPQVDRFVLSNGNHIILLAEGRLVNLGCAKGHPSFVMSNSFCNQTLAQIELWTKAEKYPV
GVHMLPKKLDEEVAALHLEKLGVKLTKLTEKQAKYLGLCAEGPFKPEYYRY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g12133.t16 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 87 | 0 |
| 10 | g12133.t16 | Gene3D | G3DSA:3.40.50.1480 | - | 88 | 171 | 0 |
| 3 | g12133.t16 | PANTHER | PTHR23420 | ADENOSYLHOMOCYSTEINASE | 1 | 171 | 0 |
| 4 | g12133.t16 | PANTHER | PTHR23420:SF20 | ADENOSYLHOMOCYSTEINASE | 1 | 171 | 0 |
| 2 | g12133.t16 | Pfam | PF00670 | S-adenosyl-L-homocysteine hydrolase, NAD binding domain | 1 | 91 | 0 |
| 1 | g12133.t16 | Pfam | PF05221 | S-adenosyl-L-homocysteine hydrolase | 92 | 170 | 0 |
| 7 | g12133.t16 | SMART | SM00997 | AdoHcyase_NAD_2 | 1 | 91 | 0 |
| 8 | g12133.t16 | SMART | SM00996 | AdoHcyase_2 | 1 | 170 | 0 |
| 5 | g12133.t16 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1 | 92 | 0 |
| 6 | g12133.t16 | SUPERFAMILY | SSF52283 | Formate/glycerate dehydrogenase catalytic domain-like | 13 | 171 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
