Gene loci information

Transcript annotation

  • This transcript has been annotated as Adenosylhomocysteinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12133 g12133.t5 isoform g12133.t5 21223771 21225692
chr_1 g12133 g12133.t5 exon g12133.t5.exon1 21223771 21223866
chr_1 g12133 g12133.t5 cds g12133.t5.CDS1 21223772 21223866
chr_1 g12133 g12133.t5 TTS g12133.t5 21223774 21223774
chr_1 g12133 g12133.t5 exon g12133.t5.exon2 21223914 21224030
chr_1 g12133 g12133.t5 cds g12133.t5.CDS2 21223914 21224030
chr_1 g12133 g12133.t5 exon g12133.t5.exon3 21224085 21224414
chr_1 g12133 g12133.t5 cds g12133.t5.CDS3 21224085 21224414
chr_1 g12133 g12133.t5 exon g12133.t5.exon4 21224471 21225011
chr_1 g12133 g12133.t5 cds g12133.t5.CDS4 21224471 21225011
chr_1 g12133 g12133.t5 exon g12133.t5.exon5 21225261 21225451
chr_1 g12133 g12133.t5 cds g12133.t5.CDS5 21225261 21225451
chr_1 g12133 g12133.t5 exon g12133.t5.exon6 21225668 21225692
chr_1 g12133 g12133.t5 cds g12133.t5.CDS6 21225668 21225692
chr_1 g12133 g12133.t5 TSS g12133.t5 21225730 21225730

Sequences

>g12133.t5 Gene=g12133 Length=1300
ATGTCTAAGCCGGCCTATAAAGTTGCTGATATAAGTCTTGCAGACCTCGGTCGCAAAGAA
ATCATCATTGCTGAAAATGAAATGCCCGGTTTGATGGCAATTCGTAAAAAGTATGGGCCA
CAAAAGATTTTGAAGGGAGCTCGCATTGCCGGCTGCTTGCATATGACAGTACAAACTGCA
GTTCTTATTGAAACACTCTTGGAATTGGGTGCTGAGGTTCAATGGAGCAGTTGTAATATT
TTCAGTACTCAAGACTCTGCTGCTGCTGCAATTGCGAAACGTGGTGTGCCTGTATATGCA
TGGAAAGGCGAAACTGAAGAGGAATACATATGGTGTATTGAACAAACACTTGTATTTCCA
AATAACGAGCCTCTTAATATGATTTTGGATGACGGCGGTGACTTAACAAATCTTGTTCAC
GAAAAATATCCACAATACTTGACTGGAATCAAGGGAATCAGCGAGGAGACAACGACTGGA
GTTCACAATCTTTACAACATGTTCAGGGAAAATAAACTTAAAGTTCCTGCAATCAATGTA
AATGATTCTGTTACCAAGAGCAAATTCGATAATCTCTATGGATGCCGTGAATCTTTAATT
GATGGAATTAAGCGTGCTACTGATGTCATGATTGCAGGAAAAGTGTGTGTTGTTGCTGGT
TATGGAGATGTTGGTAAAGGTTGTGCTCAAGCTCTTCGATCATTTGGCGGCAGAGTTATT
ATTACAGAAATTGATCCAATCAATGCTCTGCAAGCAGCAATGGAAGGATATGAAGTAACA
ACTATGGATGAAGCAGCCAGTGAAGGAAATATTTTTGTTACAACAACTGGTTGCACAGAC
ATCATTATGGGAGATCATTTTATGAAAATGAAAGATGATTCAATTGTTTGTAATATTGGT
CATTTTGATTGTGAAGTTAACGTAGCTTGGCTTGAAGAAAATGCAAAGGAAAAAGTCAAT
ATTAAGCCACAAGTTGATAGATTTGTTTTAAGTAACGGCAATCACATTATTCTTTTGGCT
GAAGGACGATTGGTTAATCTCGGTTGTGCCAAGGGCCATCCATCGTTTGTGATGTCAAAT
TCTTTCTTTGGAGTTCATATGTTACCTAAGAAACTTGATGAGGAAGTCGCAGCACTTCAT
CTTGAAAAATTGGGAGTAAAACTTACAAAACTCACAGAAAAGCAAGCTAAATATTTGGGA
CTTTCATTTTTTTACCATATAATCATCATCTGTGTGTGTACTGAATTAAAATTAAAAAAT
AAAATGTGGAATCATTGGGAACTTCTTTTAAATTTCTAAA

>g12133.t5 Gene=g12133 Length=432
MSKPAYKVADISLADLGRKEIIIAENEMPGLMAIRKKYGPQKILKGARIAGCLHMTVQTA
VLIETLLELGAEVQWSSCNIFSTQDSAAAAIAKRGVPVYAWKGETEEEYIWCIEQTLVFP
NNEPLNMILDDGGDLTNLVHEKYPQYLTGIKGISEETTTGVHNLYNMFRENKLKVPAINV
NDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVCVVAGYGDVGKGCAQALRSFGGRVI
ITEIDPINALQAAMEGYEVTTMDEAASEGNIFVTTTGCTDIIMGDHFMKMKDDSIVCNIG
HFDCEVNVAWLEENAKEKVNIKPQVDRFVLSNGNHIILLAEGRLVNLGCAKGHPSFVMSN
SFFGVHMLPKKLDEEVAALHLEKLGVKLTKLTEKQAKYLGLSFFYHIIIICVCTELKLKN
KMWNHWELLLNF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g12133.t5 CDD cd00401 SAHH 15 401 0.0
10 g12133.t5 Gene3D G3DSA:3.40.50.1480 - 1 196 9.5E-96
8 g12133.t5 Gene3D G3DSA:3.40.50.720 - 197 350 3.9E-75
9 g12133.t5 Gene3D G3DSA:3.40.50.1480 - 351 403 4.3E-15
5 g12133.t5 Hamap MF_00563 S-inosyl-L-homocysteine hydrolase [ahcY]. 1 406 44.459488
3 g12133.t5 PANTHER PTHR23420 ADENOSYLHOMOCYSTEINASE 5 402 9.6E-221
4 g12133.t5 PANTHER PTHR23420:SF20 ADENOSYLHOMOCYSTEINASE 5 402 9.6E-221
14 g12133.t5 PIRSF PIRSF001109 SAHH 1 404 1.1E-176
1 g12133.t5 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 6 141 4.4E-73
2 g12133.t5 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 191 352 3.7E-85
12 g12133.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 397 -
13 g12133.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 398 416 -
11 g12133.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 417 432 -
19 g12133.t5 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 77 91 -
18 g12133.t5 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 213 229 -
17 g12133.t5 SMART SM00996 AdoHcyase_2 5 406 1.4E-272
16 g12133.t5 SMART SM00997 AdoHcyase_NAD_2 191 352 1.5E-113
7 g12133.t5 SUPERFAMILY SSF52283 Formate/glycerate dehydrogenase catalytic domain-like 3 402 1.02E-102
6 g12133.t5 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 191 352 5.24E-77
20 g12133.t5 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 6 400 2.6E-187

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004013 adenosylhomocysteinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values