General information for g12133.t54
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Adenosylhomocysteinase.
Parent gene
- The parent gene g12133 is located on chr_1: 21225692..21227548 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12133 | g12133.t54 | TTS | g12133.t54 | 21223774 | 21223774 |
| chr_1 | g12133 | g12133.t54 | isoform | g12133.t54 | 21223873 | 21225692 |
| chr_1 | g12133 | g12133.t54 | exon | g12133.t54.exon1 | 21223873 | 21224414 |
| chr_1 | g12133 | g12133.t54 | cds | g12133.t54.CDS1 | 21223873 | 21224414 |
| chr_1 | g12133 | g12133.t54 | exon | g12133.t54.exon2 | 21224471 | 21224824 |
| chr_1 | g12133 | g12133.t54 | cds | g12133.t54.CDS2 | 21224471 | 21224600 |
| chr_1 | g12133 | g12133.t54 | exon | g12133.t54.exon3 | 21224896 | 21225011 |
| chr_1 | g12133 | g12133.t54 | exon | g12133.t54.exon4 | 21225261 | 21225451 |
| chr_1 | g12133 | g12133.t54 | exon | g12133.t54.exon5 | 21225668 | 21225692 |
| chr_1 | g12133 | g12133.t54 | TSS | g12133.t54 | 21225730 | 21225730 |
Sequences
>g12133.t54 Gene=g12133 Length=1228
ATGTCTAAGCCGGCCTATAAAGTTGCTGATATAAGTCTTGCAGACCTCGGTCGCAAAGAA
ATCATCATTGCTGAAAATGAAATGCCCGGTTTGATGGCAATTCGTAAAAAGTATGGGCCA
CAAAAGATTTTGAAGGGAGCTCGCATTGCCGGCTGCTTGCATATGACAGTACAAACTGCA
GTTCTTATTGAAACACTCTTGGAATTGGGTGCTGAGGTTCAATGGAGCAGTTGTAATATT
TTCAGTACTCAAGACTCTGCTGCTGCTGCAATTGCGAAACGTGGTGTGCCTGTATATGCA
TGGAAAGGCGAAACTGAAGAGGAATACATATGTAACAAATCTTGTTCACGAAAAATATCC
ACAATACTTGACTGGAATCAAGGGAATCAGCGAGGAGACAACGACTGGAGTTCACAATCT
TTACAACATGTTCAGGGAAAATAAACTTAAAGTTCCTGCAATCAATGTAAATGATTCTGT
TACCAAGAGCAAATTCGATAATCTCTATGGATGCCGTGAATCTTTAATTGATGGAATTAA
GCGTGCTACTGATGTCATGATTGCAGGAAAAGTGTGTGTTGTTGCTGGTTATGGAGATGT
TGGTAAAGGTTGTGCTCAAGCTCTTCGATCATTTGGCGGCAGAGTTATTATTACAGAAAT
TGATCCAATCAATGCTCTGCAAGCAGCAATGGAAGGATATGAAGTAACAACTATGGATGA
AGCAGCCAGTGAAGGAAATATTTTTGTTACAACAACTGGTTGCACAGACATCATTATGGG
AGATCATTTTATGAAAATGAAAGATGATTCAATTGTTTGTAATATTGGTCATTTTGATTG
TGAAGTTAACGTAGCTTGGCTTGAAGAAAATGCAAAGGAAAAAGTCAATATTAAGCCACA
AGTTGATAGATTTGTTTTAAGTAACGGCAATCACATTATTCTTTTGGCTGAAGGACGATT
GGTTAATCTCGGTTGTGCCAAGGGCCATCCATCGTTTGTGATGTCAAATTCTTTCTGTAA
CCAGACACTTGCCCAAATTGAGCTTTGGACTAAAGCTGAAAAATATCCAGTTGGAGTTCA
TATGTTACCTAAGAAACTTGATGAGGAAGTCGCAGCACTTCATCTTGAAAAATTGGGAGT
AAAACTTACAAAACTCACAGAAAAGCAAGCTAAATATTTGGGACTTTGTGCAGAAGGACC
ATTCAAACCTGAATACTATCGCTACTAA
>g12133.t54 Gene=g12133 Length=223
MIAGKVCVVAGYGDVGKGCAQALRSFGGRVIITEIDPINALQAAMEGYEVTTMDEAASEG
NIFVTTTGCTDIIMGDHFMKMKDDSIVCNIGHFDCEVNVAWLEENAKEKVNIKPQVDRFV
LSNGNHIILLAEGRLVNLGCAKGHPSFVMSNSFCNQTLAQIELWTKAEKYPVGVHMLPKK
LDEEVAALHLEKLGVKLTKLTEKQAKYLGLCAEGPFKPEYYRY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g12133.t54 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 139 | 4.9E-66 |
| 11 | g12133.t54 | Gene3D | G3DSA:3.40.50.1480 | - | 140 | 223 | 1.4E-40 |
| 3 | g12133.t54 | PANTHER | PTHR23420 | ADENOSYLHOMOCYSTEINASE | 1 | 223 | 1.3E-125 |
| 4 | g12133.t54 | PANTHER | PTHR23420:SF20 | ADENOSYLHOMOCYSTEINASE | 1 | 223 | 1.3E-125 |
| 2 | g12133.t54 | Pfam | PF00670 | S-adenosyl-L-homocysteine hydrolase, NAD binding domain | 1 | 143 | 1.8E-72 |
| 1 | g12133.t54 | Pfam | PF05221 | S-adenosyl-L-homocysteine hydrolase | 144 | 222 | 5.1E-37 |
| 9 | g12133.t54 | ProSitePatterns | PS00739 | S-adenosyl-L-homocysteine hydrolase signature 2. | 4 | 20 | - |
| 7 | g12133.t54 | SMART | SM00997 | AdoHcyase_NAD_2 | 1 | 143 | 6.1E-88 |
| 8 | g12133.t54 | SMART | SM00996 | AdoHcyase_2 | 1 | 222 | 7.3E-64 |
| 5 | g12133.t54 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1 | 143 | 1.21E-64 |
| 6 | g12133.t54 | SUPERFAMILY | SSF52283 | Formate/glycerate dehydrogenase catalytic domain-like | 65 | 223 | 1.02E-32 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004013 | adenosylhomocysteinase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
