General information for g1214.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as G2/mitotic-specific cyclin-B.
Parent gene
- The parent gene g1214 is located on chr_3: 8799364..8800949 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1214 | g1214.t1 | TTS | g1214.t1 | 8799169 | 8799169 |
| chr_3 | g1214 | g1214.t1 | isoform | g1214.t1 | 8799364 | 8800949 |
| chr_3 | g1214 | g1214.t1 | exon | g1214.t1.exon1 | 8799364 | 8799645 |
| chr_3 | g1214 | g1214.t1 | cds | g1214.t1.CDS1 | 8799364 | 8799645 |
| chr_3 | g1214 | g1214.t1 | exon | g1214.t1.exon2 | 8799706 | 8799963 |
| chr_3 | g1214 | g1214.t1 | cds | g1214.t1.CDS2 | 8799706 | 8799963 |
| chr_3 | g1214 | g1214.t1 | exon | g1214.t1.exon3 | 8800019 | 8800336 |
| chr_3 | g1214 | g1214.t1 | cds | g1214.t1.CDS3 | 8800019 | 8800336 |
| chr_3 | g1214 | g1214.t1 | exon | g1214.t1.exon4 | 8800397 | 8800703 |
| chr_3 | g1214 | g1214.t1 | cds | g1214.t1.CDS4 | 8800397 | 8800703 |
| chr_3 | g1214 | g1214.t1 | exon | g1214.t1.exon5 | 8800758 | 8800849 |
| chr_3 | g1214 | g1214.t1 | cds | g1214.t1.CDS5 | 8800758 | 8800849 |
| chr_3 | g1214 | g1214.t1 | exon | g1214.t1.exon6 | 8800908 | 8800949 |
| chr_3 | g1214 | g1214.t1 | cds | g1214.t1.CDS6 | 8800908 | 8800949 |
| chr_3 | g1214 | g1214.t1 | TSS | g1214.t1 | 8801040 | 8801040 |
Sequences
>g1214.t1 Gene=g1214 Length=1299
ATGCCGCAAATACGTATTGCAAAGGATCGTGATCAAAATGAAATGGTGGAAAAGAAACCT
ACTCGAAAAACTCAAACTGATGGTACTAAACGAAAGGTTCTAAGTGATTTAAACAATCGA
CAATTGACAAACAATGCATTTCGAAAGCCAGAAAAAAAGTCGACTGAGAATTCAAAGGAA
AAGAAACAGATTAGTTCACTGCAGCCAAAAAAAGCAGTATCATTTCCAAAAGAGCTTATC
ACGTCTGACATATTGATTCCCAGAGATGATAGGAGTAAGCATACTGTGAGTAGAACTCTG
CTTGAGAGACTTTTGTTGAATCCACGAAAACAACTTCCAACAGCTAATTCAAAAAGCCGT
TTTCTTGCTTTACAAAATGTTAGAAATAAAGAACCAGGTTTAGATTTTCTCGAGAAAAAG
TCAGGTCATTCTTTTGAAGAGATTAAAAATATTGATGCAAAAGATAAAGATACAGCAAGA
GTGTCTCAATATGTCAATGATATTTATGCATATCTTATGCAGTTGGAAAATTCGTTCATA
ATTCAACCAAACTTTCTTGACAAGCATCCCGATCTAACTCCTAATATGCGTGCAATTTTA
GCTGAATGGATCAATGAAGTTCATGTAGAATTTAATTTAACAACTGAAGTTTATTTCTTG
GCTATATCTATTTTGGATCGTTATACACAGAAAATCAACAATATTCCACGTCGCAGTTAT
CAGTTGATTGGAACAACGGCTTTATTCATTGCATCTAAGTATGAAGAAATATATCCGCAC
AAAGTCGCAGAATTCGTATATATAACTGATGATGCATATACTACTCAACAAATTATTACA
ATGGAGTTTGAAATTCTAAAATCACTCGATTTTCGTTTAAATATTCCATTATCAATACAT
TTTATCCGCCGATTTTTCAAAGCAGCCAATATCTCAAAAACACAATACATTGCGTGCAGA
TACTTATTAGAAATAGCAACAGTTGATTTTGAACTTTCTACGAAGCTTCCATCAGAGATT
GCAGCTGCTACTCTTTATATTATTCTTTATATTTACAATACTCGTAAACAAAATGATATA
TGGACTCCGACATTAGAATTCTATACAACTTATAAAGCGGACGATCTTCAATCAACAGTT
TCAAAATTAGCCAAAGTTGTATTATCGGCTGTAGAAGATGATTATGATAGTACGATGCAA
TTTGTCATTAAAAAGTACGCTAAATCTGTTTATGATAGCGTTTCAACATCTGAAGAATTG
ACTGGTGGAAAAATTCAAGAGCTGGCTATGAAGAATTAA
>g1214.t1 Gene=g1214 Length=432
MPQIRIAKDRDQNEMVEKKPTRKTQTDGTKRKVLSDLNNRQLTNNAFRKPEKKSTENSKE
KKQISSLQPKKAVSFPKELITSDILIPRDDRSKHTVSRTLLERLLLNPRKQLPTANSKSR
FLALQNVRNKEPGLDFLEKKSGHSFEEIKNIDAKDKDTARVSQYVNDIYAYLMQLENSFI
IQPNFLDKHPDLTPNMRAILAEWINEVHVEFNLTTEVYFLAISILDRYTQKINNIPRRSY
QLIGTTALFIASKYEEIYPHKVAEFVYITDDAYTTQQIITMEFEILKSLDFRLNIPLSIH
FIRRFFKAANISKTQYIACRYLLEIATVDFELSTKLPSEIAAATLYIILYIYNTRKQNDI
WTPTLEFYTTYKADDLQSTVSKLAKVVLSAVEDDYDSTMQFVIKKYAKSVYDSVSTSEEL
TGGKIQELAMKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g1214.t1 | CDD | cd00043 | CYCLIN | 196 | 286 | 7.36453E-19 |
| 11 | g1214.t1 | CDD | cd00043 | CYCLIN | 294 | 383 | 5.04286E-8 |
| 7 | g1214.t1 | Gene3D | G3DSA:1.10.472.10 | - | 167 | 416 | 5.6E-79 |
| 8 | g1214.t1 | Gene3D | G3DSA:1.10.472.10 | - | 181 | 294 | 5.6E-79 |
| 18 | g1214.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - |
| 17 | g1214.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 34 | - |
| 16 | g1214.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 66 | - |
| 3 | g1214.t1 | PANTHER | PTHR10177:SF193 | G2/MITOTIC-SPECIFIC CYCLIN-B1 | 22 | 430 | 7.0E-68 |
| 4 | g1214.t1 | PANTHER | PTHR10177 | CYCLINS | 22 | 430 | 7.0E-68 |
| 9 | g1214.t1 | PIRSF | PIRSF001771 | Cyclin_A_B_D_E | 3 | 431 | 1.1E-85 |
| 1 | g1214.t1 | Pfam | PF00134 | Cyclin, N-terminal domain | 167 | 294 | 4.8E-41 |
| 2 | g1214.t1 | Pfam | PF02984 | Cyclin, C-terminal domain | 296 | 419 | 2.0E-20 |
| 12 | g1214.t1 | ProSitePatterns | PS00292 | Cyclins signature. | 197 | 228 | - |
| 14 | g1214.t1 | SMART | SM00385 | cyclin_7 | 202 | 287 | 6.6E-22 |
| 13 | g1214.t1 | SMART | SM01332 | Cyclin_C_2 | 296 | 420 | 1.1E-20 |
| 15 | g1214.t1 | SMART | SM00385 | cyclin_7 | 300 | 385 | 5.8E-7 |
| 5 | g1214.t1 | SUPERFAMILY | SSF47954 | Cyclin-like | 159 | 294 | 2.06E-46 |
| 6 | g1214.t1 | SUPERFAMILY | SSF47954 | Cyclin-like | 295 | 417 | 2.21E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K06659 (G2/mitotic-specific cyclin 3/4)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
