General information for g12176.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12176 is located on chr_1: 21484453..21485791 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12176 | g12176.t3 | TTS | g12176.t3 | 21482244 | 21482244 |
| chr_1 | g12176 | g12176.t3 | isoform | g12176.t3 | 21482373 | 21483289 |
| chr_1 | g12176 | g12176.t3 | exon | g12176.t3.exon1 | 21482373 | 21482565 |
| chr_1 | g12176 | g12176.t3 | cds | g12176.t3.CDS1 | 21482373 | 21482565 |
| chr_1 | g12176 | g12176.t3 | exon | g12176.t3.exon2 | 21482624 | 21482986 |
| chr_1 | g12176 | g12176.t3 | cds | g12176.t3.CDS2 | 21482624 | 21482986 |
| chr_1 | g12176 | g12176.t3 | exon | g12176.t3.exon3 | 21483054 | 21483289 |
| chr_1 | g12176 | g12176.t3 | cds | g12176.t3.CDS3 | 21483054 | 21483208 |
| chr_1 | g12176 | g12176.t3 | TSS | g12176.t3 | 21484101 | 21484101 |
Sequences
>g12176.t3 Gene=g12176 Length=792
TATTTAAAACTCAAAAATGCAAAAATAACTCAAATCTCAAGCTACTGCCCAATTGACCTT
TTCTCAGGCAACGCAGAACGAATGAATCGTGCTATAAAAGGGCTCTTTGATAATCCACAG
AATAATTTGAAAATGTTTCAAGACGGTAAAATGGTTTATAATGAATATTCGCCTGATAAG
CACTCACTAAAACGCATAATGAAAAGCCTTTTTCCGGATGTTAAAAGTGTTGATAAACAG
GAAATTTTAATGATAAATTTGATTCGAAAAATTTTAACAAAAGATTTTACATGCTGTGAT
AATGAAATAGAAATTTGTACTGGATATGAAAGCACTGAAAATGTTCATTTAAGAAGATGC
ATTGGTGAAATGTTTTCGGAACTACCGAGCAACTGCATTTTGAGCAGCATATTAAAAGCA
CAGCATCTAGTTGGTGATAATCTTACAAATATGGAGTTTTTTGAAAAAGAAGGAATGAAT
GCAATTGATGGTTATGAAAAAATTGTACAAGATTATAGATTGGGAAGCACTGCATTAGAT
TGTTCTGTTATGATTACACTAAGAAAAGTCAATTGCAATGAAAGTTTTGATAATGAAATC
GAAAAATTAGTAAACAAAAACCATTATCTCAGACTTAATGTACCAGGAAGAAGTGTTCAG
CATTTTGCAGTAAATGTGACAGTCGTTGATTTAGATGAGAAAAAAGATGCACTGGCACAT
TATCGAAAGTACAAGAAGCAATACATGGAAAGTAAATTTGCTTATTATGAATTCATGAAA
AGTATTCAATAA
>g12176.t3 Gene=g12176 Length=236
MNRAIKGLFDNPQNNLKMFQDGKMVYNEYSPDKHSLKRIMKSLFPDVKSVDKQEILMINL
IRKILTKDFTCCDNEIEICTGYESTENVHLRRCIGEMFSELPSNCILSSILKAQHLVGDN
LTNMEFFEKEGMNAIDGYEKIVQDYRLGSTALDCSVMITLRKVNCNESFDNEIEKLVNKN
HYLRLNVPGRSVQHFAVNVTVVDLDEKKDALAHYRKYKKQYMESKFAYYEFMKSIQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g12176.t3 | PANTHER | PTHR14456 | INOSITOL POLYPHOSPHATE KINASE 1 | 1 | 229 | 0 |
| 1 | g12176.t3 | Pfam | PF06090 | Inositol-pentakisphosphate 2-kinase | 1 | 219 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0035299 | inositol pentakisphosphate 2-kinase activity | MF |
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
