General information for g12176.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12176 is located on chr_1: 21484453..21485791 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12176 | g12176.t6 | TTS | g12176.t6 | 21482244 | 21482244 |
| chr_1 | g12176 | g12176.t6 | isoform | g12176.t6 | 21482373 | 21483813 |
| chr_1 | g12176 | g12176.t6 | exon | g12176.t6.exon1 | 21482373 | 21482565 |
| chr_1 | g12176 | g12176.t6 | cds | g12176.t6.CDS1 | 21482373 | 21482565 |
| chr_1 | g12176 | g12176.t6 | exon | g12176.t6.exon2 | 21482624 | 21482982 |
| chr_1 | g12176 | g12176.t6 | cds | g12176.t6.CDS2 | 21482624 | 21482973 |
| chr_1 | g12176 | g12176.t6 | exon | g12176.t6.exon3 | 21483054 | 21483289 |
| chr_1 | g12176 | g12176.t6 | exon | g12176.t6.exon4 | 21483369 | 21483577 |
| chr_1 | g12176 | g12176.t6 | exon | g12176.t6.exon5 | 21483646 | 21483813 |
| chr_1 | g12176 | g12176.t6 | TSS | g12176.t6 | 21484101 | 21484101 |
Sequences
>g12176.t6 Gene=g12176 Length=1165
ATGAAAAACAGCAAAATTTCAACGATCATAAGCATGAACTGATGTCCTTCATACATTTTG
AGGAATTGCTACAAAAATATTTTGATCATTTTACCGTCGTGCCAAAAATAGCTTTTGTTG
ATGTCGATATAAGCGCACTAAATGAATTTTTAATGCGTGACCGACCAGTTGTAAGAAGAA
CAAAAGTTATTGGTCATAACTATGGACTTTTATATAGAGATGTGGCATTTTTACCAAAAG
AAATTTACATTGGCAAACAAATAAATGGCGAATTCAAGGATTCACCAACAATTTGTATTG
AGATAAAAGTGAAACAAGGATATGTTATGACAAATGATGACCAATGTGCTCAAAAATGTA
GATATTGCTACTTTCAGTATTTAAAACTCAAAAATGCAAAAATAACTCAAATCTCAAGCT
ACTGCCCAATTGACCTTTTCTCAGGCAACGCAGAACGAATGAATCGTGCTATAAAAGGGC
TCTTTGATAATCCACAGAATAATTTGAAAATGTTTCAAGACGGTAAAATGGTTTATAATG
AATATTCGCCTGATAAGCACTCACTAAAACGCATAATGAAAAGCCTTTTTCCGGATGTTA
AAAGTGTTGATAAGAAATTTTAATGATAAATTTGATTCGAAAAATTTTAACAAAAGATTT
TACATGCTGTGATAATGAAATAGAAATTTGTACTGGATATGAAAGCACTGAAAATGTTCA
TTTAAGAAGATGCATTGGTGAAATGTTTTCGGAACTACCGAGCAACTGCATTTTGAGCAG
CATATTAAAAGCACAGCATCTAGTTGGTGATAATCTTACAAATATGGAGTTTTTTGAAAA
AGAAGGAATGAATGCAATTGATGGTTATGAAAAAATTGTACAAGATTATAGATTGGGAAG
CACTGCATTAGATTGTTCTGTTATGATTACACTAAGAAAAGTCAATTGCAATGAAAGTTT
TGATAATGAAATCGAAAAATTAGTAAACAAAAACCATTATCTCAGACTTAATGTACCAGG
AAGAAGTGTTCAGCATTTTGCAGTAAATGTGACAGTCGTTGATTTAGATGAGAAAAAAGA
TGCACTGGCACATTATCGAAAGTACAAGAAGCAATACATGGAAAGTAAATTTGCTTATTA
TGAATTCATGAAAAGTATTCAATAA
>g12176.t6 Gene=g12176 Length=180
MINLIRKILTKDFTCCDNEIEICTGYESTENVHLRRCIGEMFSELPSNCILSSILKAQHL
VGDNLTNMEFFEKEGMNAIDGYEKIVQDYRLGSTALDCSVMITLRKVNCNESFDNEIEKL
VNKNHYLRLNVPGRSVQHFAVNVTVVDLDEKKDALAHYRKYKKQYMESKFAYYEFMKSIQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g12176.t6 | Pfam | PF06090 | Inositol-pentakisphosphate 2-kinase | 3 | 163 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0035299 | inositol pentakisphosphate 2-kinase activity | MF |
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
