General information for g12195.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable isoaspartyl peptidase/L-asparaginase GA20639.
Parent gene
- The parent gene g12195 is located on chr_1: 21684937..21686260 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12195 | g12195.t4 | TSS | g12195.t4 | 21684910 | 21684910 |
| chr_1 | g12195 | g12195.t4 | isoform | g12195.t4 | 21684937 | 21686260 |
| chr_1 | g12195 | g12195.t4 | exon | g12195.t4.exon1 | 21684937 | 21685018 |
| chr_1 | g12195 | g12195.t4 | exon | g12195.t4.exon2 | 21685141 | 21685662 |
| chr_1 | g12195 | g12195.t4 | cds | g12195.t4.CDS1 | 21685266 | 21685662 |
| chr_1 | g12195 | g12195.t4 | exon | g12195.t4.exon3 | 21685714 | 21685818 |
| chr_1 | g12195 | g12195.t4 | cds | g12195.t4.CDS2 | 21685714 | 21685818 |
| chr_1 | g12195 | g12195.t4 | exon | g12195.t4.exon4 | 21685965 | 21686260 |
| chr_1 | g12195 | g12195.t4 | cds | g12195.t4.CDS3 | 21685965 | 21686260 |
| chr_1 | g12195 | g12195.t4 | TTS | g12195.t4 | 21686317 | 21686317 |
Sequences
>g12195.t4 Gene=g12195 Length=1005
ATGAGGTTTTTGACATTAATTTCTCTTTTGACACTTTTTAGTTATAGCTTTGGCGGTAAT
GTGACAATTATTTGTCATGGAGCTACTAAATAAAATTTAAAGTTTATAGGAAAATACCGT
GGCACTGTTCTTGCAGTTCAAATTGGTTATAACATTTTAAAAACTAATGGTACTTCTCTT
GATGCTGTTGAGGCAGCTGTGCGAAGTATGGAAGTCGATGAAGAATTTAATGCTGGTTAT
GGAAGTGTTTTGACAAGTGAAGGTAAAGTTGAAATGGATGCTTGCATCATGGACGGAGAA
ACAATGAAGGTTGGCGCAGTGACAGGAGTTCAAAATATTTTTCATACAATTACTCTTGCA
AGAAAAGTTATGGAAAAAACGAGATACAACTTTTTAAGCCCAGAAGGGGCAATGAAGCTT
GCAAAAGATGAAGGATTTCAATTTTTACCTGAAGGAACTTTAGTAACAGAGCGTGCAAAA
CTTTCATTAGAAAATTGGAAACGAAATCAAAATCAAAGTTTAGGCGAGCAAGTTGGCGAG
GGTGGGACTGTAGGCTGTGCTGCCTACGATATCAATGGCAATTTAGCAGCAGCAACATCA
ACAGGTGGCCTAACTGGAAAAATGAGTGGAAGAATCGGTGATACACCGATAGTTGGAGGA
GGCACTTATGCGGACAATAAATTGGGAGCACTTTCTGCAACAGGCACTGGTGAAGTCATA
ATGAAATCGGTACTTGTATATGACATTTTAAAACGATACGAATACAAGCAAATAAGTTTG
CAACAAGCAGCACAAGAAGCATGTGATGATATGACTGAAAGATATGATGATGATGGGGGT
GTTATTGGCCTCGACAAAGACGGTAATGTCGCAATTGGATTCTCTTCTCCTCAAATGTCT
TGGGCTTATCAAAATGAACCAGAAAATGTTCATTATGGAATTGAACATGAAATTTCTCAC
ATTTATAATATTGCAGAATGTAAGAGTAAAAATTGTTTCCAATAA
>g12195.t4 Gene=g12195 Length=265
MEVDEEFNAGYGSVLTSEGKVEMDACIMDGETMKVGAVTGVQNIFHTITLARKVMEKTRY
NFLSPEGAMKLAKDEGFQFLPEGTLVTERAKLSLENWKRNQNQSLGEQVGEGGTVGCAAY
DINGNLAAATSTGGLTGKMSGRIGDTPIVGGGTYADNKLGALSATGTGEVIMKSVLVYDI
LKRYEYKQISLQQAAQEACDDMTERYDDDGGVIGLDKDGNVAIGFSSPQMSWAYQNEPEN
VHYGIEHEISHIYNIAECKSKNCFQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g12195.t4 | CDD | cd04702 | ASRGL1_like | 1 | 235 | 0 |
| 5 | g12195.t4 | Gene3D | G3DSA:3.60.20.30 | (Glycosyl)asparaginase | 114 | 255 | 0 |
| 2 | g12195.t4 | PANTHER | PTHR10188 | L-ASPARAGINASE | 1 | 246 | 0 |
| 3 | g12195.t4 | PANTHER | PTHR10188:SF37 | SI:CH211-256M1.8 | 1 | 246 | 0 |
| 1 | g12195.t4 | Pfam | PF01112 | Asparaginase | 1 | 240 | 0 |
| 4 | g12195.t4 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 1 | 243 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
| GO:0004067 | asparaginase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed