Gene loci information

Transcript annotation

  • This transcript has been annotated as Dynein heavy chain 6, axonemal.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12248 g12248.t1 isoform g12248.t1 21987503 22000150
chr_1 g12248 g12248.t1 exon g12248.t1.exon1 21987503 21987541
chr_1 g12248 g12248.t1 cds g12248.t1.CDS1 21987503 21987541
chr_1 g12248 g12248.t1 exon g12248.t1.exon2 21987601 21987657
chr_1 g12248 g12248.t1 cds g12248.t1.CDS2 21987601 21987657
chr_1 g12248 g12248.t1 exon g12248.t1.exon3 21987715 21988137
chr_1 g12248 g12248.t1 cds g12248.t1.CDS3 21987715 21988137
chr_1 g12248 g12248.t1 exon g12248.t1.exon4 21988201 21989808
chr_1 g12248 g12248.t1 cds g12248.t1.CDS4 21988201 21989808
chr_1 g12248 g12248.t1 exon g12248.t1.exon5 21989871 21990037
chr_1 g12248 g12248.t1 cds g12248.t1.CDS5 21989871 21990037
chr_1 g12248 g12248.t1 exon g12248.t1.exon6 21990191 21991912
chr_1 g12248 g12248.t1 cds g12248.t1.CDS6 21990191 21991912
chr_1 g12248 g12248.t1 exon g12248.t1.exon7 21991969 21992071
chr_1 g12248 g12248.t1 cds g12248.t1.CDS7 21991969 21992071
chr_1 g12248 g12248.t1 exon g12248.t1.exon8 21992140 21992351
chr_1 g12248 g12248.t1 cds g12248.t1.CDS8 21992140 21992351
chr_1 g12248 g12248.t1 exon g12248.t1.exon9 21992408 21996263
chr_1 g12248 g12248.t1 cds g12248.t1.CDS9 21992408 21996263
chr_1 g12248 g12248.t1 exon g12248.t1.exon10 21996320 21999586
chr_1 g12248 g12248.t1 cds g12248.t1.CDS10 21996320 21999586
chr_1 g12248 g12248.t1 exon g12248.t1.exon11 21999644 22000150
chr_1 g12248 g12248.t1 cds g12248.t1.CDS11 21999644 22000150
chr_1 g12248 g12248.t1 TTS g12248.t1 22000200 22000200
chr_1 g12248 g12248.t1 TSS g12248.t1 NA NA

Sequences

>g12248.t1 Gene=g12248 Length=11961
ATGCTTCCAAATGATAATTTGAAAAAGAAAAATAAAAGGATATCGAGTTCAACCTCATGC
CGCCATTTGGATGTTAATGATTATGACAGAATTATTCATGGATTTCCTCCAATCTTGAGA
AAAACAAAACCGTTAGAGAAAATTTTTAAAGAGGACTCATTTGTCAGTTTGCCCTCAATA
TCAAATAGGGCATCAAGTGCTCAAATTCAATCACGTCGAGCATCAGAAAAGGGAAACAGT
TATAGAAATATCGATGAACTAAATATTTCTTCATTTATTGAGAATAGAGTTAGAAATCTC
AAACAAAATGCTTTCCTCTATTTGACATATGCATATCGACAGTCGAGTGAATTTTTCACT
CCTTACAGCTTCATTGAAGTTCCATATTCTAAAATTGATAAAAGTGGATTTTTCACAATC
TCAAAAGAAGGTTTCACATTTTGGAGCCCAAACGAAAATCATTTTACACGTTTAGAAGAT
TGGTATGGCGATTATTTGAAATATTGTGATGTCATCAAAATTAAACTCTTTAAAAAATAT
CGCATTTGGAAGAGTTTCACAGTATGGCAAAAAGCAATTAAATGGAAGAAATTTTATGAT
GCCAAAAATTACATTGAAGAAAATCTGTTTTTTGCTAATCCAATTTTGCATGAAACACTT
TTGGAATTGCGAAAACATTATTGTCAATTAATTGACAAAAAGTTCACTGACATCGAGCTT
TTAGAAAATTGGCAATTGTTCTACTTTCTCGAAAATCAAATGACACAATTTGAAATGACA
CGTGACATGTTGGAAGATTTTCACACTGAAATGGAAATCAAACTTTTTGACGCTTGTTAT
CGAGCAATTAAAGAAAAAGGTTTTTCACCTGAAGATGAAATTTTAAATTGTAAATCAGTG
AAGAAACTTAAGGAACAAATTAGTTTCACAGATCGTGCAAATAAGAGATTATTTTGCTCT
CGATTGACAAATTTTCTTTGCCTTACTGATTTAATAACCATAGAACTTTTGAGTACAATT
CTTTGTACATCATTTGACGATCTTGCGAGAGTTTTTCAAATTCACTCAAAATATGGACCA
ACGTTTCAGAAATTGAAATCTTCAAATAGCATCGACGATGTGGTTCTAGAAGATCCTAGA
CCAGAAAATGTTCCACAATCACCATTTCTCATAGCAGATCTTGTTTTAAAACCTGATAAA
ATTGAAGTCGATCCTTCAAAAGATGTTTGTCTGTATGTAATTGGACAAATGTTTGATCTA
TTCTATGAAGCAGTTCATAATTTCACAGCATTTCAAGGTGGAGCAAAATTTCGTCTTTTT
ACTGAACCGTCGATTGTTGGTCACCAAGAAGACAGATTGTATAACGTTGTGCAATCTATT
GATTTCATTTTAGAGCATAATGCTGGATTAACAAATAATAAAAAATCAATAATCAACATT
ATTAATATTGCGTATGATAAAATTGAGATTTATATTAAAAGATTTGATCACATAAAAGAA
CAATACAAACAAGATTTGGCCATGAATAAGGAACATTTAAATAATGAAAAAGATTTGGAT
CAATTAATTGATTATTGTGACAGATTTACTCGAGAAATGGAATCTCTTGATGGAATTTTG
CCCGAAATCAATTTAGGCTTAATTTTGTTAAGACAAGGAACATTTAAAGAAAAAATTATT
CCAAGATGTAAAGAATTATTATCTATTCTCGAAGAACATTTACCAAAACTTGCTAAAGAG
ACCATAATTGAAGTGAGAGAAAAAGCAGAAAATTTGATGACAAAATTGATTACAGTTCCA
CAAGAGGCACAAAGTTATGTCAATTATTTGTTCTTTCTTGAAAAATGTCCACATCGAATT
GATGAAATCGAAAAAGTTTTAAAATATGCCATGCGTGCATTTCAAATAATGAAAGACTTT
GCTATAATGGTTGATGATGACGAAAAAGATCAATTTTTAGACACAGAAGAATACCTTCAT
AATGTAAAAGTTGAGTTAGAATTAAGAATCGTGTCTCGTCAAGACATTATTAATCAATTA
GAGAGAAGTTTACAAAATGATATTGAAAATATTTTCAAAGAAATTAGTGCTGTTCATGTT
GATGTCATGAAACCTGAATTAATCGATGAAAATGCAAACAGTTCTCAAGTAAGAGAGACA
CTCTCAGAATTAATGGAGAAACTTCATGAATGTCAAGAGGATTCTCAGAAAATACGAGGA
TGGCAAAAAACATTTAGAATTGATGTTACTCGATTTGACTCTCTTGATACAGTTTTTCAA
GAAGTTCGTTTAAGACAAACACTTTGGGACAACTTACAAAGTTGGAAAGATTGCTATGAA
GAACTTATTGAAATTCCTTTTCACAAATTAAATATGCAACAAGTGGTTGAACTCAATACA
AAAATTCTGAAAAATTGTGGAATGCTTGAGAAAAATTTACCACGCAATGAAATTGTACCG
CGACTTAAGGCAGATTGTGAAGAATTCAAAGAAAAAATTCCTATTCTTCAATGTCTTCGC
TCAACTGATCTAAAGCCACGACATTGGCTAAAAATCGAACAGACACTTGACAGAAAACTT
TTAGGAAATGACAACATCACACTTTATACATTTGAAGATGCAAATGCTTTTGAGGGAGAA
AATGCAGCAAGCATTCAAGAAATTACAGCACAAGCAACTGGTGAAGCTAAATTGGAAGAA
GCCTTAAAGAAAGTTGATACAGTTTGGAAGCAGCTTGAACTTTCAGTTGTATCACGTGAT
TCTCGTGATGTTTTTATTCTTGCTGGCATTGATGAATTACAATCAGTTCTCGATGATTCA
AATGTTACAATTGCCACAATTGCTGCATCAAAGCATATTGGAACACTTAAGCCAAGAATC
GATGAATGGATTCGACAACTTGATATTTTTGGCAAAACTTTTGATGAATGGATAAATGTT
CAACAATCATGGATTTATCTTGAAGCGATTTTCTCAGCACCAGATATTCAAAGACAATTA
CCACAAGAAGCTAATATTTTCAATGTTGTTGATCGTAGTTGGAAAGAAATAATGAGAAAT
GTTGCAAAATATCCTTTAGCTCTTCCTGCAATGACCCAAAATGGATATTATGAAATTCTT
CATCGCAATAATACTTTACTTGAACAAGTTCAGCGATGTTTAGAAGCTTATTTAGAATTA
AAACGTGTTGCTTTTCCTCGTTTCTATTTCTTATCAAATGAAGAATTGTTAGAAATTCTT
GCACAAACGAAAAATCCACATGCAGTTCAACCTCATTTGCAGAAATGCTTCGATGCAATT
GCAAGAATTGAATTTGCTGTAAAAGATGGCGATAAGAAAGGAGAAAAAGTTATAACAAAT
GATATATTGAGCATGATTTCACCAGAAAATGAGAAAGTTCAATTTGGTCGAGGCTTAAAA
GCTCGTGGATCTGTAGAAGATTGGCTTAGTAAAGTTGAGGAAGCGATGTTTTCTGCTGTC
AAAAGGTGCATGAAACATGCCCTACAAAATTATTCAAACATGAGTCGTCTAAAATGGCTA
TCTGAAAATGCAAATCAAGTTGTTTTGACAGTTTCACAACAACAATGGGCGATGCAAGTT
CATCAAATTTTAGATTTTGAAGGTGAAGACACAAAGAAAAATTTGATAATTTTTGATAAA
CAATTGACACAAAACTTGACAAATTTGGCATCAATTGCTAGAACTGATATTAGCCCACTA
TTGAGAAAAGTTTTGTGTGCATTAATTACTGTTGATGTTCATGCAAAAGATTCAGTTAAC
AGTCTAATTGAAAATAATGTCACAAATAGTAATGATTTTAATTGGCTTAAAATGCTGAGA
TATTATTGGAACATTGACACTGAACAAATGGAAGTGAAAATGGCATCAGCTCATATGCGT
TATTTTTATGAATATATTGGAGCTAGTGGTGTTTTAGTCATCACTCCGTTAACAGACCGA
TGTTATCTTTGTCTCATGGGCGCTCTTCAAATGGAATTAAGTGGTGCACCACAAGGGCCA
GCTGGCACCGGCAAGACAGAGACTACAAAAGATTTAGCAAAAGCTGTTGCCAAACAGTGT
GTCGTTTTTAATTGTTCTGATGGTCTTGATTATAAAATGATGGGAAGATTTTTCAGTGGA
CTAGCTCAAAGTGGTGCTTGGTGTTGCTTTGATGAGTTTAATCGCATTGACATTGAAGTT
CTTTCAGTCATTGCTCAACAACTGATTACTATAAAGAATGCAAAAGTTATGAATTTGACA
CGATTCATTTTTGAGGGAAGAGAAATCAAAATTGAACGTTCATGTGCAGCATTTATAACA
ATGAATCCTGGTTATGCTGGTCGCACTGAACTTCCTGATAATTTGAAAGCACTATTTCGA
CCTATTTCTATGATGATTCCAAACTATCAACTCATTGCTGAAGTAATTTTGTATTCAGAA
GGTTTTGAAAATTCAAAAGTGCTGGCACAAAAAATGATTCAAACTTACAAGTTATGTAGT
GAACAATTGAGTCAGCAAAGCCATTATGATTTTGGTATGCGTGCTGTCAAATCAGTTTTA
GTTATGGCTGGATCTTTAAAGAGAGCTGCACCAAATCAAGCTGAAGAAATGACACTCATT
TGTGCACTTCGCGATTCAAATTTACCGAAATTTTTAAAAGATGATGCTGCACTTTTTACA
GGAATTTTAAATGATTTATTTCCTGGCATGGAATTTCCAGTTAGCGTTCATAAAGATTTA
GAGAAATCAATTGAAGAATGCATGAAAATTAAAAATTTACAACCTTTACCTGCTCTTGTT
TCAAAAGTTGTTCAACTTTATGAGACAATGCAAGTTCGATGGGGTATTATGTTGGTGGGA
CAAGCTGGAAGTGGAAAAAGTGCGATTTTACATACTCTTGAAGAAGCTCTCATAAAACTT
TACAATGATGGTTTTCAAAATCCAAACTTTAGAAGAGTCAACACTAAAACACTCAATCCA
AAATCAATTGATGCAAATGAGCTTTATGGTTGTGTTAATCCTATGACTCTCGAATGGAAA
GATGGATTATTGGGTCTTGCTGTTCGTGCAGCTGTTGCAGAAACAAATGATGATTATCAA
TTTATTATTTGTGATGGACCAGTTGATGCTGTTTGGATTGAAAATCTCAACACTACGCTC
GATGATAATAAAATGCTTTGTCTCGCTAATTCAGAGAGAATAAAATTGACTCCACATGTT
CGAATGGTTTTTGAAGTGGAAGATTTGGAACAGGCTTCACCAGCAACTGTTTCTCGTTGT
GGAATGGTTTACATTGATTCATCTCATCTCACTTGGAAAGCTTTGATTCGCTCATGGCTA
AATACAATTGATGATGAGGTTTTTGAGACAGAACTGAAAATTTATGTTGAAGAACTTTTC
TATAAATATTTTGATGACATTTTAAATTTCTCAAAAAGCAAATGTGCATTTATTCAACAT
CAAGTTGAGATTAGTAAAATTGACATGCTCTGCACGATATTGAAGTCATTATTATTAAAA
ATTCCCAATATGAATTTAATGGAAGATTGCGATATTAAAGCTTATATTTGCAAATTATGG
CTTTGGTCAACTCTTTGGGCAATTGGGTCAAATTCTTTTGAAGCATCAAGAATTCTACTT
GAACGTCACATTCGAAAATTAATGGAAACACAAGAAAATCTTGACTTGCCTGAATCAAGT
TTATGGGAATACAGAATTAATCCAAATGAAAAAATTTGGGAAAAATGGGAAGTTCCAAAG
TTTAATTTTGATCGTCATTTACCATTTTATGAAATGATTGTACCAACATCAGATACTGTA
CGATTTGGATATGTCAGTGAAATTTTATTGAAAGAAAATCATCCAGTTTTGTTTATGGCT
GAAAGTGGTGTAGGCAAAAGTGTTCTTGCAAAAGAAATTCTCTTTAAACTTGCAAAAGAT
GGCTCAAATGTTCCCGTATTTATAAATTTCTCTGCACAAACAAATAGTAAAAGAACTCAA
GAAATGATTGAAAATCGTCTTGAAAAGAGGAAGAAAACGTTACTTGGTGCACCAGTAGGA
AAGAAAGTGATAATTTTTATTGATGATGTGAATATGCCAAAGCCAGAAATGTATGGAGCT
TCGCCACCAATTGAGTTATTGCGTCAATTTTTAGACTTTAAAGGACTTTATGACCGTGAT
AAAATGTACTGGAAGGATATTGTTGATTTAATTTTAGCAGCAGCTTGTGGACCTTCTGGT
GGTTCAAGAAATAAATTATCAGCAAGATTTATGCGACACTTTTCATTGCTCTCATTTCCA
ACACCAAATACAAACACGCTAATTGGAATTTTCGGTGGAATAATTGTTGGATTTTTCTCT
GAATTTACAAAGACCATTTGGAACTTGGCTGAACCAGTTGTTAAAGCAGCAGTTACACTT
TATGAACGAATTTCTCAAGAATTGCTGCCAACACCAACAAAATCGCATTATCTTTTCAAC
ATGCGTGATTTAGCTAAATGCATTCAAGGAATTTTACAAGCTGATACAACAACTTATAAT
AATCAAATTCAAATTTTAAGACTTTTCTATCATGAAGCACTTCGAACTTTTCATGATCGT
CTTGTAACAAAAGATGATAAGACTTATTTCAAAAATTTACTTAATGAAATTTGTAAAAAA
CAATTCGATTGTAATGTTCTTGATGGAGGAAGCACACTTTTATATGGTGACTTCATGGTA
TTTGGTCAATCAAGAGAAAATCGAATTTATGAAGAGATTAGAGACTTTTCAAAACTTAAA
AATATTCTAAATGATTATTTGCAAGATTACAATTCTTCATCAGGCAATGATTTACAATTG
ATTCTTTTTCAAGATGCAGTTGAGCATATTTTAAGACTTGCAAGAATTTTAAGAAGTGAA
AGAGGCAATGCTTTACTTGTTGGCTTATCTGGAATGGGAAAACAATCTCTTACAAGACTT
GCTTCGAATATTAATGCTTATCAATGTTATCAGATTGAACTAAAACGTGGTTATGATTAT
TCTTCATTCCGTGATGATTTAAGAAAATGTTGCACAATTGCTGGTATTAATAATCAACCA
ATTATATTTCTTCTGAATGATACACAAATTTTAAAAGAAGAATTCCTCGAAGATATTAAT
AATATTCTCAATTCTGGTGATGTACCAAATCTTTATGAAGGTGATGAATATGAAAAGTTA
ATTTTAAACACTCGTGTGCCATGCATTGAAGCAAATTATAAAGATCAAAGTCGTGATGGA
ATTTATGATTTTTTCGTATCAAGAGTTCGCTCAAATCTTCATGTTGTTATCTGTATGAGT
CCAATTGGTGAGGCATTTAGAAAAAGACTACGAATGTTTCCTTCACTTGTAAATTGTTGT
ACAATTGATTGGTTTGAGTCATGGCCACAAGAGGCATTACATACAGTTGCAAAAGGTTCA
TTAAGTCAAATATCTGATGATGAGTATCAATGTGAAAATATGGCGTCAATTTGTGTTATG
ATTCATGAAAGCGTTGAAAAAGCGTCAGAAAAATATTACTATGAAACTAAACGACATTAT
TATGCTACACCATCAAGTTATTTGGAGTTATTGAAACAATATCACGTACTTTTAAAGAAG
AAAGTTCATTCAATAACTACATTGAGAAATAAAATTGCAAATGGTTTGAATAAAATTTTA
GAGACAAATGAAATTGTCGCAATTATGGAAAATGAGCTTAAAATTATTGTTCCAATAATG
GAGAAGAAATCACAAGAAATGAAAGATACTGTACAGAAATTAGAGAAGGATACAGCACAA
GCTGATTCCATAAAGAAAATTGTTCAACAAGATGAAGCTGAGGCAAAAATTAAAGCAATG
GAAACACAAGAATTAGCTGATGATGCAGCAAAAGATTTAGAAACTGTCATGCCTCAATTA
AGAGCAGCACAAGAAGCTTTGAAAGCTTTAAATAAAAATGATGTCAATGAAATTCGAGTT
TTTCAAAAACCACCAAAACTTGTTCAATTTGTTATGGAAGCAGTTTGCATTCTTTTAAAT
TATAAGCCAGATTGGAATACTGCAAAACAAATGATGGGTGACATGAATTTTCTGAAAAGA
CTTCAAGAATATGATGCAAATCATATACCAGATGTTATTATTAAGAAACTTCAACCATAT
ATTAATCATAAAGATTTTCAACCAGCTATTGTAGAAAAAACATCAAAAACAGCTCGTTCA
ATGTGTGCATGGGTGATTGCAATGAATCGATATGCTGACGTCTATAAAGATGTTGAACCA
AAAATTAAGAAACGTGATGCAGCTGAATACGAGTTAAATCAAGTTATGCAAGTTTTAAAG
CAAAAGCAAGGACAACTTGCAGAAGCAGAGGAAAAAATTCAATCATTAAGAGACGATTTA
GATCGAAAACAAAAAGAAATGCATGAAATTCAAATGAAGTATGATTTGAATAATAAAAGA
TTAACAAGTGCAGGTCGTTTAACAACTGCATTATCAGATGAAGAAATTCGTTGGAGAGAA
ACAGTTGCAACGCTCGACTTCAATTTGTTTGCAATTCCAGGAGATATTTTGGTGGCATCT
GCTTATATCGCTTATCTCGGTGCATTCCCAATTGATTACAGAAAAAAATTATGCAAAAGA
TGGATAACTGAATGTCAAAAATTAAAAATTCCTTGTGGTGAAGATTTTGAATTTATCAAT
TGTCTCGGTGATCCCTATCAGTTAAGAGAATGGAATCTTTTTGGTTTGCCACGTGAAACA
ACTTCACTTGAGAATGGAATTATTGCAACTCAATCAAGTCGTTGGCCATTAATGATTGAT
CCACAAGAGCAAGCAAATCATTGGATTAGAAATATGGAAAGAGAAAATAATTTGATAATT
ACAAAAATGTCTGATCCTCAACTTACTCGAACACTCGAAATGGCAATTACTTCTGGCATT
CCAGTTTTATTAGAAGAAATTGGAGAAGATATTGATCCATCCATCAGACCGGTGCTTTTA
AGATCATTTTATGTGCAAGGTGGTCGAACTTTGTTGCGTTTTGGTGAAAATGATATTGAA
TATGACCCAAATTTTCGTCTGTATTTGACAACAAAACTTTCGAATCCACATTATTTCCCA
GAAGTATGCATTCAAGTTACTCTTATTAATTTTCTTGTATCATTAAATGGCTTAGAAGAT
CAATTATTATCAGAAGTTGTTCGAATTGAATTGCCAGAAATGGAAAAACAAAGAAATAAT
TTAATTGTCAGTATCAACTCTGATAAGCAACAACTGCAGCAACTTGAAGATCGAATTTTG
AAACTTCTCTTTTCATCTGATGGAAATATCCTCGATGATGAAGAACTTTTAGAGACTTTG
AATGAATCAAAGGAAACTTCAATGGTTATTGCATCACGTTTAATTGATGCTGAAAAGACT
GAAGAAGCAATAACACTTGAACGTGAAAGATATCGACCATTAGCATCCAAAGGAGCTGTT
TTGTTCTTTGTTGCATCAACTCTAATTGAAATTGATCCAATGTATCAAGTGAGCTTGCAA
TTTTTTACACAAATCTTTTGCAGTGTCATTGAAGAAGAAGCACCAAAAATGCCTTTTGAA
GAGAGACTTAAATTCTTATTGAGACGTGAAATTAAAGCAATTTATTTAAACATTTGCAGA
GGACTTTTTGAGCGTCATAAATTGATTTATAGTTTCTTGTTAGCTACAACAATACAAAAG
CATGATAAATATTTGAATGACTCAGAACTTGATTATCTTTTGCGTGGTGATTCACGTGTA
AGTGATGCAACAATTCCCGAGAAACCACATAATTTTTATAAAATTAGTGAAAAACAGTGG
AATGCATGCATTTATTTGCAAGATGAATTTGAAGATTTTGATAATCTCGCAAAAGATTTG
GACAAAACAATTGAAATAAAATTAAAAGATCAAAAATTTATTCTTACTGAAGGAATTACT
GAACGATCCCCATCAATCAATTGGACAGAACATTTGTCATCGTTTAAAAAGCTTCTTTTA
ATTGCTGCATTAAAACCTGAATCATTGATGCTTGGTATAAGTTGTTATATTCATGAGATT
CTTGGAAGAGAATTTATCGAGTCAAGAGCAACGCCACTTTCTTCAGTTTATCAAGATATG
ACACCAACTACACCATTGATTTTTGTTCTTTCAAGTGGCAGTGATCCAATGTCTTCACTT
CAAAAGTTTGCTAATGAAAAAGATTTTGGTGAAAAACTTCATTCGATATCTCTTGGTCAA
GGTCAAGGAGCAGCAGCTGAAGAACTTTTTAAAAATTGTCGCAATTCTGGTCATTGGTTA
TATTTGCAAAATTGTCATTTGTCCGTCTCATGGTTACCAAAATTGGAAATGCTCGTTCGT
GACATGATGCTTGGTAATTTAAAAATGCATGAAGATTTTCGTCTCTTTCTGTCATCAATG
CCACTCAAGAGTTTTCCTGTTAGTATTCTTCAAAATTCAGTAAAATTAACAAATGAACCA
CCAAAAGGTTTGAAAGCAAATTTAATGCGATCAATGATGGACATGAATGAAGAAATATTT
GAAATTCACGTACTTGGTGATGATTGGAGAAAAATGATTTTTGCTATGTGCATGTTCCAT
GGCATTATACTTGAAAGAAAGAAATTTGGCAGTCTTGGATTTAATATTCAATATGAATTT
AGTGATAATGATCGTGAATGTGCCCTTAAAACACTTATTCTTTATAATGACCGTGAAATT
CGTAAAAATATTCCTTGGCAAGCTCTTGAATACATTAATGGAGAAATAACATATGGCGGA
AGAGTTACAGACAATTGGGATCAAAGATGTGTCAGAACAATATTGAAACAATTTTCATGT
GAGAGAATACTCAAAGATGATTACAAATATAGCAGCAGTGGAATTTATTATTCACCAACA
TCAAATCGTTTAGAAGATTTTAAAACTTATGTCAATGAATTGCCATATAAAGAAGAACCA
GAAATTTTTGGAATGCATGAAAATGCAAGCATTGTGTATGAAACAAAAGAGGGAAATTTC
TTTTTGAAAACAATTTTAGAAAGTCAAGCAAAAGCAACAAGTGTTTCAGAAAATTCAAAT
GATGCAATAGTAATGGACGTTATTCAAAAAATTAAAAATTTGGTTAAGCGTGCAATTTTA
TTGGAAAATTTTAAAGAAGAGAAGGATGATAAAGATCGAATAATGCCATTAACTACTGTT
TTAATGCAAGAGACTGAACGATTCAATAAATTAATGAAACTTATTCATACAAATTTAGCA
GATTTAGAAAGAGGCATAAAAGGATTAATTCTAATGTCTGAAAATTTAGAAGCAATTTAT
GATGCATTTCTTTATAATCAAGTTCCACGATTATGGTCAAAAAATGGATTTTTATCAACA
AAATCTCTTGCATCATGGATTGATGATTTTGTATTGAGAATTGATCACATTCAGAATTGG
ATTAATGATGGACAACCATGCTCATCGTGGATATCTGGATTTTTTTATCCACAAAGTTTC
CTTACAGCTGTCATTCAAACACATTCTCGAAAGTATAGTATACCAATTGATACTTTGAAA
TTAGACTTTGAAGTTCTCAGCACAATAATTCTACAAAAGAAAATTAACGAGTGTGACTTG
AAAATCCCTGATGAAGGAGTTTTTGTGCATGGTTTATTTTTGGAAGCTGGAAAATGGGAT
GAAAGAAGAGGAGGATTATGTGATGCTGAAATTGGAGAATTAACAACTGTTCTTCCTGTT
TTGTGGCTTAAACCGTGTGTTGAAGTTGAAACTGGAAAACGTTATGAAGCGCCATTATAC
AAAACTCAAAATAGAGCTGGAGCATTGTCGACAACAGGACATTCAACAAATTTCATCATC
TCTGTCTTTTTAAATTCAATGCGACCTCCAAGTTTTTGGATTTTGCGTGGTACTGCATTA
GTAACACTTTTGACTGAATAA

>g12248.t1 Gene=g12248 Length=3986
MLPNDNLKKKNKRISSSTSCRHLDVNDYDRIIHGFPPILRKTKPLEKIFKEDSFVSLPSI
SNRASSAQIQSRRASEKGNSYRNIDELNISSFIENRVRNLKQNAFLYLTYAYRQSSEFFT
PYSFIEVPYSKIDKSGFFTISKEGFTFWSPNENHFTRLEDWYGDYLKYCDVIKIKLFKKY
RIWKSFTVWQKAIKWKKFYDAKNYIEENLFFANPILHETLLELRKHYCQLIDKKFTDIEL
LENWQLFYFLENQMTQFEMTRDMLEDFHTEMEIKLFDACYRAIKEKGFSPEDEILNCKSV
KKLKEQISFTDRANKRLFCSRLTNFLCLTDLITIELLSTILCTSFDDLARVFQIHSKYGP
TFQKLKSSNSIDDVVLEDPRPENVPQSPFLIADLVLKPDKIEVDPSKDVCLYVIGQMFDL
FYEAVHNFTAFQGGAKFRLFTEPSIVGHQEDRLYNVVQSIDFILEHNAGLTNNKKSIINI
INIAYDKIEIYIKRFDHIKEQYKQDLAMNKEHLNNEKDLDQLIDYCDRFTREMESLDGIL
PEINLGLILLRQGTFKEKIIPRCKELLSILEEHLPKLAKETIIEVREKAENLMTKLITVP
QEAQSYVNYLFFLEKCPHRIDEIEKVLKYAMRAFQIMKDFAIMVDDDEKDQFLDTEEYLH
NVKVELELRIVSRQDIINQLERSLQNDIENIFKEISAVHVDVMKPELIDENANSSQVRET
LSELMEKLHECQEDSQKIRGWQKTFRIDVTRFDSLDTVFQEVRLRQTLWDNLQSWKDCYE
ELIEIPFHKLNMQQVVELNTKILKNCGMLEKNLPRNEIVPRLKADCEEFKEKIPILQCLR
STDLKPRHWLKIEQTLDRKLLGNDNITLYTFEDANAFEGENAASIQEITAQATGEAKLEE
ALKKVDTVWKQLELSVVSRDSRDVFILAGIDELQSVLDDSNVTIATIAASKHIGTLKPRI
DEWIRQLDIFGKTFDEWINVQQSWIYLEAIFSAPDIQRQLPQEANIFNVVDRSWKEIMRN
VAKYPLALPAMTQNGYYEILHRNNTLLEQVQRCLEAYLELKRVAFPRFYFLSNEELLEIL
AQTKNPHAVQPHLQKCFDAIARIEFAVKDGDKKGEKVITNDILSMISPENEKVQFGRGLK
ARGSVEDWLSKVEEAMFSAVKRCMKHALQNYSNMSRLKWLSENANQVVLTVSQQQWAMQV
HQILDFEGEDTKKNLIIFDKQLTQNLTNLASIARTDISPLLRKVLCALITVDVHAKDSVN
SLIENNVTNSNDFNWLKMLRYYWNIDTEQMEVKMASAHMRYFYEYIGASGVLVITPLTDR
CYLCLMGALQMELSGAPQGPAGTGKTETTKDLAKAVAKQCVVFNCSDGLDYKMMGRFFSG
LAQSGAWCCFDEFNRIDIEVLSVIAQQLITIKNAKVMNLTRFIFEGREIKIERSCAAFIT
MNPGYAGRTELPDNLKALFRPISMMIPNYQLIAEVILYSEGFENSKVLAQKMIQTYKLCS
EQLSQQSHYDFGMRAVKSVLVMAGSLKRAAPNQAEEMTLICALRDSNLPKFLKDDAALFT
GILNDLFPGMEFPVSVHKDLEKSIEECMKIKNLQPLPALVSKVVQLYETMQVRWGIMLVG
QAGSGKSAILHTLEEALIKLYNDGFQNPNFRRVNTKTLNPKSIDANELYGCVNPMTLEWK
DGLLGLAVRAAVAETNDDYQFIICDGPVDAVWIENLNTTLDDNKMLCLANSERIKLTPHV
RMVFEVEDLEQASPATVSRCGMVYIDSSHLTWKALIRSWLNTIDDEVFETELKIYVEELF
YKYFDDILNFSKSKCAFIQHQVEISKIDMLCTILKSLLLKIPNMNLMEDCDIKAYICKLW
LWSTLWAIGSNSFEASRILLERHIRKLMETQENLDLPESSLWEYRINPNEKIWEKWEVPK
FNFDRHLPFYEMIVPTSDTVRFGYVSEILLKENHPVLFMAESGVGKSVLAKEILFKLAKD
GSNVPVFINFSAQTNSKRTQEMIENRLEKRKKTLLGAPVGKKVIIFIDDVNMPKPEMYGA
SPPIELLRQFLDFKGLYDRDKMYWKDIVDLILAAACGPSGGSRNKLSARFMRHFSLLSFP
TPNTNTLIGIFGGIIVGFFSEFTKTIWNLAEPVVKAAVTLYERISQELLPTPTKSHYLFN
MRDLAKCIQGILQADTTTYNNQIQILRLFYHEALRTFHDRLVTKDDKTYFKNLLNEICKK
QFDCNVLDGGSTLLYGDFMVFGQSRENRIYEEIRDFSKLKNILNDYLQDYNSSSGNDLQL
ILFQDAVEHILRLARILRSERGNALLVGLSGMGKQSLTRLASNINAYQCYQIELKRGYDY
SSFRDDLRKCCTIAGINNQPIIFLLNDTQILKEEFLEDINNILNSGDVPNLYEGDEYEKL
ILNTRVPCIEANYKDQSRDGIYDFFVSRVRSNLHVVICMSPIGEAFRKRLRMFPSLVNCC
TIDWFESWPQEALHTVAKGSLSQISDDEYQCENMASICVMIHESVEKASEKYYYETKRHY
YATPSSYLELLKQYHVLLKKKVHSITTLRNKIANGLNKILETNEIVAIMENELKIIVPIM
EKKSQEMKDTVQKLEKDTAQADSIKKIVQQDEAEAKIKAMETQELADDAAKDLETVMPQL
RAAQEALKALNKNDVNEIRVFQKPPKLVQFVMEAVCILLNYKPDWNTAKQMMGDMNFLKR
LQEYDANHIPDVIIKKLQPYINHKDFQPAIVEKTSKTARSMCAWVIAMNRYADVYKDVEP
KIKKRDAAEYELNQVMQVLKQKQGQLAEAEEKIQSLRDDLDRKQKEMHEIQMKYDLNNKR
LTSAGRLTTALSDEEIRWRETVATLDFNLFAIPGDILVASAYIAYLGAFPIDYRKKLCKR
WITECQKLKIPCGEDFEFINCLGDPYQLREWNLFGLPRETTSLENGIIATQSSRWPLMID
PQEQANHWIRNMERENNLIITKMSDPQLTRTLEMAITSGIPVLLEEIGEDIDPSIRPVLL
RSFYVQGGRTLLRFGENDIEYDPNFRLYLTTKLSNPHYFPEVCIQVTLINFLVSLNGLED
QLLSEVVRIELPEMEKQRNNLIVSINSDKQQLQQLEDRILKLLFSSDGNILDDEELLETL
NESKETSMVIASRLIDAEKTEEAITLERERYRPLASKGAVLFFVASTLIEIDPMYQVSLQ
FFTQIFCSVIEEEAPKMPFEERLKFLLRREIKAIYLNICRGLFERHKLIYSFLLATTIQK
HDKYLNDSELDYLLRGDSRVSDATIPEKPHNFYKISEKQWNACIYLQDEFEDFDNLAKDL
DKTIEIKLKDQKFILTEGITERSPSINWTEHLSSFKKLLLIAALKPESLMLGISCYIHEI
LGREFIESRATPLSSVYQDMTPTTPLIFVLSSGSDPMSSLQKFANEKDFGEKLHSISLGQ
GQGAAAEELFKNCRNSGHWLYLQNCHLSVSWLPKLEMLVRDMMLGNLKMHEDFRLFLSSM
PLKSFPVSILQNSVKLTNEPPKGLKANLMRSMMDMNEEIFEIHVLGDDWRKMIFAMCMFH
GIILERKKFGSLGFNIQYEFSDNDRECALKTLILYNDREIRKNIPWQALEYINGEITYGG
RVTDNWDQRCVRTILKQFSCERILKDDYKYSSSGIYYSPTSNRLEDFKTYVNELPYKEEP
EIFGMHENASIVYETKEGNFFLKTILESQAKATSVSENSNDAIVMDVIQKIKNLVKRAIL
LENFKEEKDDKDRIMPLTTVLMQETERFNKLMKLIHTNLADLERGIKGLILMSENLEAIY
DAFLYNQVPRLWSKNGFLSTKSLASWIDDFVLRIDHIQNWINDGQPCSSWISGFFYPQSF
LTAVIQTHSRKYSIPIDTLKLDFEVLSTIILQKKINECDLKIPDEGVFVHGLFLEAGKWD
ERRGGLCDAEIGELTTVLPVLWLKPCVEVETGKRYEAPLYKTQNRAGALSTTGHSTNFII
SVFLNSMRPPSFWILRGTALVTLLTE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
41 g12248.t1 CDD cd00009 AAA 1948 2096 6.50516E-7
39 g12248.t1 Coils Coil Coil 714 734 -
38 g12248.t1 Coils Coil Coil 2577 2600 -
40 g12248.t1 Coils Coil Coil 2772 2813 -
37 g12248.t1 Coils Coil Coil 3078 3098 -
21 g12248.t1 Gene3D G3DSA:1.20.140.100 - 897 1063 5.9E-42
22 g12248.t1 Gene3D G3DSA:3.20.180.20 - 1064 1170 4.5E-31
36 g12248.t1 Gene3D G3DSA:1.20.58.1120 - 1171 1315 2.9E-35
31 g12248.t1 Gene3D G3DSA:3.40.50.300 - 1316 1466 2.3E-70
28 g12248.t1 Gene3D G3DSA:1.10.8.710 - 1467 1575 4.6E-40
30 g12248.t1 Gene3D G3DSA:3.40.50.300 - 1578 1808 3.1E-86
27 g12248.t1 Gene3D G3DSA:1.10.472.130 - 1809 1934 2.1E-5
32 g12248.t1 Gene3D G3DSA:3.40.50.300 - 1935 2464 8.6E-195
24 g12248.t1 Gene3D G3DSA:1.20.920.30 - 2103 2299 8.6E-195
26 g12248.t1 Gene3D G3DSA:1.20.920.20 - 2466 2887 1.0E-98
25 g12248.t1 Gene3D G3DSA:1.20.920.20 - 2524 2862 1.0E-98
34 g12248.t1 Gene3D G3DSA:3.40.50.11510 - 2902 3070 1.6E-64
35 g12248.t1 Gene3D G3DSA:1.10.8.1220 - 3151 3241 9.3E-14
29 g12248.t1 Gene3D G3DSA:3.40.50.300 - 3371 3498 7.6E-39
33 g12248.t1 Gene3D G3DSA:1.10.8.720 - 3499 3666 4.4E-50
23 g12248.t1 Gene3D G3DSA:1.20.1270.280 - 3674 3836 7.3E-17
12 g12248.t1 PANTHER PTHR46454 DYNEIN AXONEMAL HEAVY CHAIN 7-RELATED 246 3985 0.0
13 g12248.t1 PANTHER PTHR46454:SF6 DYNEIN HEAVY CHAIN, CYTOPLASMIC-LIKE PROTEIN 246 3985 0.0
5 g12248.t1 Pfam PF08393 Dynein heavy chain, N-terminal region 2 755 1167 2.3E-118
3 g12248.t1 Pfam PF12774 Hydrolytic ATP binding site of dynein motor region 1301 1627 3.4E-155
9 g12248.t1 Pfam PF17852 Dynein heavy chain AAA lid domain 1797 1917 6.0E-16
7 g12248.t1 Pfam PF12775 P-loop containing dynein motor region 1922 2102 2.1E-66
8 g12248.t1 Pfam PF17857 AAA+ lid domain 2133 2223 6.9E-18
2 g12248.t1 Pfam PF12780 P-loop containing dynein motor region D4 2278 2537 3.5E-101
1 g12248.t1 Pfam PF12777 Microtubule-binding stalk of dynein motor 2551 2881 2.3E-47
4 g12248.t1 Pfam PF12781 ATP-binding dynein motor region 2909 3128 9.9E-86
11 g12248.t1 Pfam PF03028 Dynein heavy chain region D6 P-loop domain 3382 3497 1.8E-42
10 g12248.t1 Pfam PF18198 Dynein heavy chain AAA lid domain 3515 3669 1.5E-50
6 g12248.t1 Pfam PF18199 Dynein heavy chain C-terminal domain 3676 3981 1.1E-93
20 g12248.t1 SMART SM00382 AAA_5 1331 1470 5.6
18 g12248.t1 SMART SM00382 AAA_5 1612 1750 9.3
19 g12248.t1 SMART SM00382 AAA_5 1952 2105 0.0012
16 g12248.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1320 1526 6.82E-25
17 g12248.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1547 1767 6.62E-13
15 g12248.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1951 2213 5.04E-20
14 g12248.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2258 2542 4.04E-25

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007018 microtubule-based movement BP
GO:0005524 ATP binding MF
GO:0008569 minus-end-directed microtubule motor activity MF
GO:0005858 axonemal dynein complex CC
GO:0060285 cilium-dependent cell motility BP
GO:0030286 dynein complex CC
GO:0003777 microtubule motor activity MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values